Wall clock time and date at job start Mon Mar 30 2020 07:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38250 * 119.97993 * 2 1 4 4 C 1.38184 * 120.03655 * 180.02562 * 3 2 1 5 5 C 1.38486 * 120.00456 * 359.97438 * 4 3 2 6 6 F 1.35099 * 120.02202 * 180.02562 * 5 4 3 7 7 C 1.38420 * 119.95621 * 359.97438 * 5 4 3 8 8 C 1.50709 * 120.01325 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46972 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.47428 * 60.00092 * 8 7 5 11 11 H 1.08005 * 119.99558 * 354.55837 * 10 8 7 12 12 C 1.37870 * 120.00172 * 174.55878 * 10 8 7 13 13 N 1.31517 * 120.00200 * 352.01614 * 12 10 8 14 14 Si 1.86802 * 120.00199 * 172.01421 * 12 10 8 15 15 H 1.48500 * 109.46911 * 59.99726 * 14 12 10 16 16 H 1.48497 * 109.47554 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47075 * 300.00315 * 14 12 10 18 18 C 1.53001 * 109.47209 * 299.99883 * 8 7 5 19 19 N 1.46902 * 109.47000 * 295.56854 * 18 8 7 20 20 C 1.38327 * 119.96855 * 0.27826 * 7 5 4 21 21 Cl 1.73598 * 120.00433 * 179.70042 * 20 7 5 22 22 H 1.08996 * 109.47376 * 89.99575 * 1 2 3 23 23 H 1.09005 * 109.46757 * 209.99379 * 1 2 3 24 24 H 1.09004 * 109.47230 * 329.99129 * 1 2 3 25 25 H 1.07995 * 119.97740 * 0.03377 * 3 2 1 26 26 H 1.07994 * 119.99506 * 180.02562 * 4 3 2 27 27 H 0.96995 * 120.00110 * 179.97438 * 13 12 10 28 28 H 1.08994 * 109.47153 * 175.56621 * 18 8 7 29 29 H 1.09003 * 109.47282 * 55.56191 * 18 8 7 30 30 H 1.00906 * 111.00102 * 174.60543 * 19 18 8 31 31 H 1.00898 * 111.00099 * 298.56204 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1975 0.0000 4 6 3.5797 1.1989 -0.0005 5 6 4.2734 0.0003 -0.0005 6 9 5.6243 0.0012 -0.0005 7 6 3.5816 -1.1987 0.0005 8 6 4.3353 -2.5038 0.0011 9 1 3.6270 -3.3323 0.0015 10 6 5.2021 -2.5828 1.2312 11 1 5.2747 -1.7347 1.8960 12 6 5.9025 -3.7377 1.5081 13 7 5.6951 -4.8204 0.7908 14 14 7.1459 -3.7646 2.9018 15 1 6.4628 -3.4439 4.1808 16 1 7.7590 -5.1141 2.9923 17 1 8.2048 -2.7569 2.6400 18 6 5.2144 -2.5856 -1.2484 19 7 4.3629 -2.6156 -2.4451 20 6 2.1984 -1.1983 -0.0042 21 17 1.3299 -2.7015 -0.0107 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5140 25 1 1.6571 2.1324 0.0006 26 1 4.1186 2.1347 -0.0001 27 1 6.1881 -5.6328 0.9854 28 1 5.8180 -3.4923 -1.2092 29 1 5.8688 -1.7149 -1.2900 30 1 4.9196 -2.5810 -3.2860 31 1 3.7629 -3.4268 -2.4418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260336511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:22 Heat of formation + Delta-G solvation = -58.087271 kcal Electronic energy + Delta-G solvation = -17416.603129 eV Core-core repulsion = 14443.877929 eV Total energy + Delta-G solvation = -2972.725200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.61445 -40.26167 -37.18544 -37.05980 -34.18487 -33.30998 -32.21766 -29.36328 -27.30564 -25.91231 -23.80217 -23.07519 -21.01705 -18.75415 -18.36580 -17.36633 -16.82235 -16.52402 -16.29545 -15.66692 -15.38404 -15.16637 -14.70939 -14.53959 -14.22821 -13.94505 -13.64005 -13.12763 -12.92665 -12.91619 -12.81960 -12.60015 -12.34973 -12.07479 -11.84814 -11.72391 -11.37078 -11.06934 -10.44009 -9.48841 -9.38260 -9.19784 -8.16721 -6.24221 0.22893 0.42892 1.35855 1.37438 1.39285 1.46715 2.39500 2.69659 3.13045 3.58930 3.92135 3.99654 4.03091 4.17179 4.40805 4.66134 4.75968 4.88552 4.90383 4.98976 5.13186 5.22496 5.30300 5.38164 5.43374 5.53498 5.75732 5.91273 6.02889 6.18575 6.45566 6.69444 6.88472 7.40300 8.90156 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.008772 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.847157 B = 3191.209282 C = 3513.113435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.096 4.096 4 C -0.147 4.147 5 C 0.074 3.926 6 F -0.146 7.146 7 C -0.065 4.065 8 C 0.080 3.920 9 H 0.041 0.959 10 C -0.521 4.521 11 H 0.043 0.957 12 C 0.023 3.977 13 N -0.912 5.912 14 Si 0.945 3.055 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.274 1.274 18 C 0.081 3.919 19 N -0.844 5.844 20 C -0.033 4.033 21 Cl -0.067 7.067 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.178 0.822 26 H 0.158 0.842 27 H 0.262 0.738 28 H 0.017 0.983 29 H 0.044 0.956 30 H 0.336 0.664 31 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 10.131 -3.251 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.114 4.114 4 C -0.166 4.166 5 C 0.054 3.946 6 F -0.125 7.125 7 C -0.066 4.066 8 C 0.061 3.939 9 H 0.059 0.941 10 C -0.559 4.559 11 H 0.061 0.939 12 C -0.177 4.177 13 N -0.550 5.550 14 Si 0.770 3.230 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.199 1.199 18 C -0.050 4.050 19 N -0.372 5.372 20 C -0.060 4.060 21 Cl -0.038 7.038 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.114 0.886 25 H 0.195 0.805 26 H 0.176 0.824 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.148 0.852 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.019 10.489 -2.984 14.152 hybrid contribution 1.862 -1.689 0.489 2.561 sum -7.157 8.800 -2.495 11.614 Atomic orbital electron populations 1.20866 0.87994 1.04107 1.03649 1.20159 0.98379 0.90625 1.00138 1.21059 0.92239 0.98199 0.99878 1.21462 0.95878 0.96483 1.02779 1.17694 0.76948 0.94403 1.05530 1.91412 1.29772 1.97274 1.94018 1.20180 0.92999 0.96589 0.96875 1.17774 0.93709 0.89649 0.92767 0.94061 1.21176 1.27662 0.98872 1.08196 0.93887 1.25578 0.98471 0.94968 0.98685 1.70034 1.41815 1.01351 1.41833 0.85810 0.79804 0.77210 0.80129 1.19729 1.20560 1.19950 1.21672 0.94923 0.98332 0.90030 1.58877 1.25734 1.48294 1.04285 1.20594 0.90901 0.87522 1.06965 1.98302 1.75397 1.33240 1.96890 0.89683 0.91803 0.88556 0.80504 0.82419 0.92900 0.96470 0.93765 0.85222 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.61 71.24 0.68 -1.66 16 2 C -0.09 -2.72 5.88 -19.84 -0.12 -2.84 16 3 C -0.10 -2.46 9.70 22.26 0.22 -2.25 16 4 C -0.15 -4.54 10.03 22.32 0.22 -4.32 16 5 C 0.07 3.04 6.62 22.37 0.15 3.18 16 6 F -0.15 -6.63 14.28 44.97 0.64 -5.99 16 7 C -0.06 -2.87 4.47 -19.80 -0.09 -2.96 16 8 C 0.08 4.06 1.81 -12.28 -0.02 4.04 16 9 H 0.04 2.25 6.13 -2.39 -0.01 2.24 16 10 C -0.52 -29.32 7.58 25.60 0.19 -29.13 16 11 H 0.04 2.47 7.43 -2.91 -0.02 2.45 16 12 C 0.02 1.26 5.19 84.65 0.44 1.70 16 13 N -0.91 -52.64 12.08 21.45 0.26 -52.38 16 14 Si 0.94 44.63 29.54 68.60 2.03 46.66 16 15 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 17 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 18 C 0.08 3.94 5.91 86.30 0.51 4.45 16 19 N -0.84 -33.68 9.30 -186.72 -1.74 -35.42 16 20 C -0.03 -1.27 6.31 22.32 0.14 -1.13 16 21 Cl -0.07 -2.52 25.35 -2.72 -0.07 -2.59 16 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.48 6.91 -2.38 -0.02 1.46 16 24 H 0.10 1.47 8.09 -2.38 -0.02 1.46 16 25 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 26 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.02 0.92 6.75 -2.39 -0.02 0.91 16 29 H 0.04 2.20 6.20 -2.39 -0.01 2.18 16 30 H 0.34 11.55 9.08 -89.69 -0.81 10.74 16 31 H 0.33 13.19 9.05 -89.70 -0.81 12.38 16 Total: -1.00 -64.00 277.15 3.01 -61.00 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.44 Total: 19.62 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 2.33 Total: -30.90 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.48 Total: -87.80 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.64 Total: -5.99 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.07 Total: -2.59 kcal Total: -64.00 3.01 -61.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.909 kcal (2) G-P(sol) polarization free energy of solvation -64.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds