Wall clock time and date at job start Mon Mar 30 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.97395 * 2 1 4 4 C 1.38187 * 120.05245 * 180.02562 * 3 2 1 5 5 C 1.38448 * 119.98692 * 359.97357 * 4 3 2 6 6 F 1.35105 * 120.02898 * 180.02562 * 5 4 3 7 7 C 1.38540 * 119.94022 * 0.02562 * 5 4 3 8 8 Cl 1.73596 * 120.02788 * 179.97438 * 7 5 4 9 9 C 1.38218 * 119.96605 * 180.22466 * 2 1 3 10 10 C 1.50703 * 119.99811 * 0.02562 * 9 2 1 11 11 H 1.08999 * 109.46323 * 354.40412 * 10 9 2 12 12 C 1.50700 * 109.47039 * 234.40458 * 10 9 2 13 13 H 1.08000 * 119.99609 * 264.88102 * 12 10 9 14 14 C 1.37874 * 119.99979 * 84.87814 * 12 10 9 15 15 N 1.31505 * 120.00325 * 6.16721 * 14 12 10 16 16 Si 1.86804 * 119.99762 * 186.17052 * 14 12 10 17 17 H 1.48497 * 109.47360 * 89.99770 * 16 14 12 18 18 H 1.48500 * 109.46946 * 210.00254 * 16 14 12 19 19 H 1.48508 * 109.46945 * 329.99842 * 16 14 12 20 20 C 1.52997 * 109.47192 * 114.39948 * 10 9 2 21 21 N 1.46904 * 109.47263 * 185.65114 * 20 10 9 22 22 H 1.09004 * 109.46783 * 95.38177 * 1 2 3 23 23 H 1.08999 * 109.47188 * 215.38138 * 1 2 3 24 24 H 1.08999 * 109.47363 * 335.38745 * 1 2 3 25 25 H 1.08005 * 119.96964 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.00765 * 179.97438 * 4 3 2 27 27 H 0.97004 * 120.00502 * 180.02562 * 15 14 12 28 28 H 1.08999 * 109.47635 * 305.65611 * 20 10 9 29 29 H 1.09009 * 109.46977 * 65.65450 * 20 10 9 30 30 H 1.00900 * 110.99990 * 181.93517 * 21 20 10 31 31 H 1.00900 * 110.99682 * 305.89416 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1996 -0.0005 5 6 4.2732 0.0014 -0.0005 6 9 5.6243 0.0023 -0.0005 7 6 3.5807 -1.1985 -0.0005 8 17 4.4481 -2.7022 -0.0012 9 6 2.1974 -1.1974 -0.0047 10 6 1.4430 -2.5020 -0.0104 11 1 0.3758 -2.3049 0.0902 12 6 1.9071 -3.3556 1.1416 13 1 2.6760 -4.0983 0.9879 14 6 1.3501 -3.1884 2.3917 15 7 0.3322 -2.3719 2.5542 16 14 2.0417 -4.1217 3.8547 17 1 3.1108 -3.3150 4.4960 18 1 0.9572 -4.3765 4.8367 19 1 2.6066 -5.4156 3.3943 20 6 1.7041 -3.2364 -1.3270 21 7 0.8653 -4.4407 -1.3907 22 1 -0.3633 -0.0964 -1.0232 23 1 -0.3633 -0.8379 0.5950 24 1 -0.3634 0.9343 0.4280 25 1 1.6568 2.1325 -0.0004 26 1 4.1185 2.1356 -0.0010 27 1 -0.0595 -2.2539 3.4338 28 1 1.4622 -2.5804 -2.1632 29 1 2.7547 -3.5221 -1.3815 30 1 1.0424 -4.9603 -2.2373 31 1 1.0015 -5.0197 -0.5757 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365711.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:55 Heat of formation + Delta-G solvation = -52.046112 kcal Electronic energy + Delta-G solvation = -17541.471969 eV Core-core repulsion = 14569.008734 eV Total energy + Delta-G solvation = -2972.463236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.84643 -40.43944 -37.27874 -36.69773 -34.12534 -33.18753 -32.21287 -29.18193 -27.23365 -26.18876 -23.92456 -22.37835 -21.34808 -18.78462 -18.33941 -17.09423 -16.69511 -16.61442 -16.57197 -16.11284 -15.46979 -14.88030 -14.81749 -14.45944 -14.19097 -13.70674 -13.36435 -13.34782 -13.01355 -12.87959 -12.81887 -12.47601 -12.42423 -11.89523 -11.74100 -11.63352 -11.20882 -10.89871 -10.35895 -9.45270 -9.22800 -9.16152 -8.05229 -6.05802 0.20855 0.41574 1.37178 1.40765 1.44198 1.49062 2.46258 2.69900 3.23618 3.32369 3.89882 4.04015 4.16756 4.36167 4.43234 4.68457 4.78877 4.81661 4.99982 5.01696 5.12635 5.16549 5.28465 5.39237 5.56377 5.72288 5.81764 5.96739 6.16926 6.40669 6.54748 6.92504 7.02834 7.56515 9.02699 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.010524 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.066803 B = 2659.883015 C = 2826.237711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.090 4.090 4 C -0.157 4.157 5 C 0.068 3.932 6 F -0.143 7.143 7 C -0.080 4.080 8 Cl -0.061 7.061 9 C -0.019 4.019 10 C 0.065 3.935 11 H 0.062 0.938 12 C -0.495 4.495 13 H 0.056 0.944 14 C 0.032 3.968 15 N -0.900 5.900 16 Si 0.924 3.076 17 H -0.290 1.290 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.075 3.925 21 N -0.846 5.846 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.258 0.742 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.337 0.663 31 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 5.594 -6.056 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.108 4.108 4 C -0.176 4.176 5 C 0.048 3.952 6 F -0.122 7.122 7 C -0.107 4.107 8 Cl -0.032 7.032 9 C -0.021 4.021 10 C 0.046 3.954 11 H 0.080 0.920 12 C -0.533 4.533 13 H 0.074 0.926 14 C -0.169 4.169 15 N -0.538 5.538 16 Si 0.752 3.248 17 H -0.217 1.217 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.056 4.056 21 N -0.376 5.376 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.183 0.817 26 H 0.184 0.816 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.148 0.852 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.470 6.011 -5.914 8.787 hybrid contribution 1.746 -1.305 1.199 2.488 sum 4.216 4.707 -4.715 7.884 Atomic orbital electron populations 1.20830 0.89883 1.03759 1.02274 1.20133 0.97685 0.91919 0.99772 1.21277 0.92957 0.98540 0.97986 1.21192 0.95107 0.96208 1.05079 1.17694 0.76771 0.93827 1.06868 1.91439 1.29022 1.97402 1.94341 1.20942 0.93304 0.86016 1.10455 1.98284 1.75759 1.32402 1.96762 1.20444 0.90789 0.98427 0.92428 1.18046 0.97065 0.87902 0.92338 0.91965 1.21184 1.20253 1.18423 0.93464 0.92595 1.25391 0.94817 0.96142 1.00505 1.69937 1.22715 1.38130 1.23054 0.86073 0.77962 0.79580 0.81135 1.21665 1.21230 1.19537 1.21792 0.94352 0.92368 0.97078 1.58632 1.60914 1.10655 1.07418 0.90947 0.90734 0.90605 0.81733 0.81638 0.93284 0.93648 0.95749 0.85152 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.88 9.28 71.24 0.66 -3.22 16 2 C -0.09 -3.54 5.88 -19.86 -0.12 -3.66 16 3 C -0.09 -2.73 9.67 22.26 0.22 -2.51 16 4 C -0.16 -4.81 10.03 22.31 0.22 -4.58 16 5 C 0.07 2.55 7.28 22.39 0.16 2.71 16 6 F -0.14 -5.24 16.84 44.97 0.76 -4.48 16 7 C -0.08 -3.34 6.04 22.36 0.14 -3.20 16 8 Cl -0.06 -2.53 22.90 -2.72 -0.06 -2.59 16 9 C -0.02 -0.81 4.78 -19.85 -0.09 -0.90 16 10 C 0.07 2.97 1.87 -12.29 -0.02 2.95 16 11 H 0.06 3.13 4.92 -2.39 -0.01 3.12 16 12 C -0.50 -24.71 5.55 25.60 0.14 -24.56 16 13 H 0.06 2.82 6.58 -2.91 -0.02 2.80 16 14 C 0.03 1.66 5.45 84.66 0.46 2.13 16 15 N -0.90 -48.13 12.22 21.44 0.26 -47.86 16 16 Si 0.92 42.93 29.54 68.60 2.03 44.96 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 20 C 0.07 3.02 5.99 86.30 0.52 3.54 16 21 N -0.85 -31.53 9.64 -186.71 -1.80 -33.33 16 22 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 23 H 0.07 3.20 5.61 -2.39 -0.01 3.19 16 24 H 0.08 2.21 8.05 -2.39 -0.02 2.19 16 25 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 26 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 27 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.02 0.98 5.68 -2.38 -0.01 0.97 16 30 H 0.34 10.27 9.08 -89.69 -0.81 9.46 16 31 H 0.34 13.61 8.05 -89.69 -0.72 12.89 16 Total: -1.00 -56.18 272.96 3.12 -53.06 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.35 Total: 21.57 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 2.28 Total: -31.32 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.54 Total: -81.20 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.76 Total: -4.48 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.06 Total: -2.59 kcal Total: -56.18 3.12 -53.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365711.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.015 kcal (2) G-P(sol) polarization free energy of solvation -56.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds