Wall clock time and date at job start Mon Mar 30 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76199 * 102.99838 * 2 1 4 4 C 1.38983 * 120.07103 * 0.29870 * 3 2 1 5 5 C 1.38056 * 119.93204 * 180.29452 * 4 3 2 6 6 C 1.38416 * 120.07358 * 359.68315 * 5 4 3 7 7 Cl 1.73599 * 119.93886 * 180.02562 * 6 5 4 8 8 C 1.38380 * 120.12879 * 359.97438 * 6 5 4 9 9 C 1.38102 * 120.06958 * 0.04361 * 8 6 5 10 10 C 1.50703 * 120.03677 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.47275 * 145.00396 * 10 9 8 12 12 N 1.46898 * 109.46797 * 24.99911 * 10 9 8 13 13 C 1.50700 * 109.47148 * 265.00172 * 10 9 8 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00083 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 H 1.09007 * 109.47066 * 300.00118 * 1 2 3 22 22 H 1.09000 * 109.47439 * 59.99593 * 1 2 3 23 23 H 1.08995 * 109.47395 * 180.02562 * 1 2 3 24 24 H 1.08004 * 120.03435 * 359.97438 * 4 3 2 25 25 H 1.08006 * 119.96561 * 179.69937 * 5 4 3 26 26 H 1.07997 * 119.96550 * 180.02562 * 8 6 5 27 27 H 1.00892 * 111.00332 * 300.00256 * 12 10 9 28 28 H 1.00905 * 110.99665 * 63.96030 * 12 10 9 29 29 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6659 0.0063 5 6 1.5088 4.0104 0.0001 6 6 2.8329 4.4136 -0.0057 7 17 3.2234 6.1051 -0.0128 8 6 3.8460 3.4710 -0.0048 9 6 3.5386 2.1247 0.0010 10 6 4.6425 1.0988 0.0014 11 1 4.3374 0.2369 0.5948 12 7 5.8574 1.6871 0.5810 13 6 4.9220 0.6610 -1.4133 14 1 4.3570 1.0838 -2.2309 15 6 5.8996 -0.2783 -1.6639 16 7 6.5880 -0.7927 -0.6683 17 14 6.2466 -0.8204 -3.4175 18 1 7.3351 -1.8304 -3.4172 19 1 5.0187 -1.4154 -4.0037 20 1 6.6621 0.3541 -4.2256 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.1616 2.3520 0.0107 25 1 0.7202 4.7484 0.0001 26 1 4.8783 3.7886 -0.0089 27 1 6.1607 2.4885 0.0483 28 1 5.7148 1.9298 1.5499 29 1 6.4080 -0.5109 0.2424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372281.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:17 Heat of formation + Delta-G solvation = 13.023312 kcal Electronic energy + Delta-G solvation = -14757.207110 eV Core-core repulsion = 12217.945577 eV Total energy + Delta-G solvation = -2539.261532 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.09802 -36.34531 -34.94543 -31.67471 -30.73305 -29.56990 -28.61398 -25.70341 -23.02016 -22.41867 -20.42985 -17.45251 -16.84628 -15.97045 -15.48508 -14.54501 -14.30749 -14.05221 -13.73573 -13.64653 -13.43897 -13.12270 -12.53866 -12.21760 -12.05257 -11.60501 -11.26630 -11.10129 -10.77536 -10.63899 -10.41220 -10.02507 -9.60469 -9.17141 -9.01745 -8.36366 -8.17969 -7.59472 -6.90485 -6.16269 -3.98975 1.35156 1.63159 1.89382 2.36052 2.84776 3.50719 3.52128 3.70466 3.88657 4.63353 4.99468 5.10748 5.16816 5.19590 5.41522 5.54527 5.68434 5.75941 5.86602 6.01545 6.21498 6.34507 6.51218 6.58871 7.04660 7.15589 7.92899 8.24819 8.62909 8.70190 9.05559 9.82940 11.23705 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.008509 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.339925 B = 3289.713940 C = 4317.617014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 S -0.053 6.053 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.037 4.037 7 Cl -0.087 7.087 8 C -0.105 4.105 9 C -0.038 4.038 10 C 0.239 3.761 11 H 0.052 0.948 12 N -0.829 5.829 13 C -0.599 4.599 14 H 0.046 0.954 15 C 0.042 3.958 16 N -0.889 5.889 17 Si 1.062 2.938 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.290 1.290 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.327 0.673 28 H 0.303 0.697 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 7.063 2.532 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.340 4.340 2 S 0.192 5.808 3 C -0.200 4.200 4 C -0.152 4.152 5 C -0.138 4.138 6 C -0.066 4.066 7 Cl -0.058 7.058 8 C -0.126 4.126 9 C -0.046 4.046 10 C 0.129 3.871 11 H 0.070 0.930 12 N -0.357 5.357 13 C -0.638 4.638 14 H 0.064 0.936 15 C -0.168 4.168 16 N -0.523 5.523 17 Si 0.891 3.109 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.217 1.217 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.114 0.886 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.212 4.385 1.483 10.309 hybrid contribution -2.503 3.401 0.943 4.327 sum -11.714 7.785 2.426 14.273 Atomic orbital electron populations 1.23807 0.98909 1.06489 1.04762 1.86329 1.01387 1.01891 1.91239 1.21790 0.96155 0.97305 1.04710 1.21006 0.98151 0.92298 1.03723 1.20664 0.94341 0.95671 1.03102 1.20826 0.94599 0.84067 1.07105 1.98329 1.94614 1.15706 1.97158 1.20815 0.98768 0.91550 1.01436 1.21308 0.94965 0.95393 0.92915 1.18452 0.81798 0.89295 0.97557 0.93046 1.59426 1.36179 1.36266 1.03866 1.21500 1.24271 1.28292 0.89726 0.93555 1.25556 0.92756 0.93338 1.05137 1.70555 1.38467 1.41166 1.02090 0.83670 0.76241 0.76288 0.74708 1.20912 1.21522 1.21702 0.90586 0.90274 0.87836 0.85736 0.85595 0.85079 0.85897 0.88567 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.15 101.05 0.92 -1.17 15 2 S -0.05 -0.96 20.85 -107.50 -2.24 -3.20 15 3 C -0.09 -1.62 6.11 -39.04 -0.24 -1.86 15 4 C -0.13 -2.01 9.36 -39.37 -0.37 -2.38 15 5 C -0.12 -1.79 9.82 -39.58 -0.39 -2.18 15 6 C -0.04 -0.61 6.32 -39.46 -0.25 -0.86 15 7 Cl -0.09 -1.26 28.95 -51.86 -1.50 -2.76 15 8 C -0.10 -1.96 9.05 -39.58 -0.36 -2.31 15 9 C -0.04 -0.78 5.00 -104.41 -0.52 -1.31 15 10 C 0.24 5.69 1.93 -70.02 -0.13 5.56 15 11 H 0.05 1.34 6.89 -51.93 -0.36 0.99 15 12 N -0.83 -18.54 7.39 -6.65 -0.05 -18.59 15 13 C -0.60 -16.22 8.69 -34.44 -0.30 -16.52 15 14 H 0.05 1.30 7.74 -52.49 -0.41 0.89 15 15 C 0.04 1.18 5.39 -17.82 -0.10 1.09 15 16 N -0.89 -26.38 13.51 55.43 0.75 -25.63 15 17 Si 1.06 25.20 29.90 -169.99 -5.08 20.12 15 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 21 H 0.08 0.82 7.74 -51.92 -0.40 0.42 15 22 H 0.08 0.90 7.76 -51.92 -0.40 0.50 15 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.12 1.61 5.88 -52.48 -0.31 1.30 15 25 H 0.13 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.13 2.38 6.29 -52.49 -0.33 2.05 15 27 H 0.33 7.05 7.20 -39.30 -0.28 6.77 15 28 H 0.30 6.00 9.06 -39.29 -0.36 5.64 15 29 H 0.29 8.58 6.39 -40.82 -0.26 8.32 15 LS Contribution 273.88 15.07 4.13 4.13 Total: -1.00 -29.54 273.88 -8.48 -38.01 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -2.75 Total: 9.86 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -1.73 Total: -21.94 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.70 Total: -44.22 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.24 Total: -3.20 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.54 -8.48 -38.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372281.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.037 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds