Wall clock time and date at job start Mon Mar 30 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76199 * 102.99838 * 2 1 4 4 C 1.38983 * 120.07103 * 0.29870 * 3 2 1 5 5 C 1.38056 * 119.93204 * 180.29452 * 4 3 2 6 6 C 1.38416 * 120.07358 * 359.68315 * 5 4 3 7 7 Cl 1.73599 * 119.93886 * 180.02562 * 6 5 4 8 8 C 1.38380 * 120.12879 * 359.97438 * 6 5 4 9 9 C 1.38102 * 120.06958 * 0.04361 * 8 6 5 10 10 C 1.50703 * 120.03677 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.47275 * 145.00396 * 10 9 8 12 12 N 1.46898 * 109.46797 * 24.99911 * 10 9 8 13 13 C 1.50700 * 109.47148 * 265.00172 * 10 9 8 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00083 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 H 1.09007 * 109.47066 * 300.00118 * 1 2 3 22 22 H 1.09000 * 109.47439 * 59.99593 * 1 2 3 23 23 H 1.08995 * 109.47395 * 180.02562 * 1 2 3 24 24 H 1.08004 * 120.03435 * 359.97438 * 4 3 2 25 25 H 1.08006 * 119.96561 * 179.69937 * 5 4 3 26 26 H 1.07997 * 119.96550 * 180.02562 * 8 6 5 27 27 H 1.00892 * 111.00332 * 300.00256 * 12 10 9 28 28 H 1.00905 * 110.99665 * 63.96030 * 12 10 9 29 29 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6659 0.0063 5 6 1.5088 4.0104 0.0001 6 6 2.8329 4.4136 -0.0057 7 17 3.2234 6.1051 -0.0128 8 6 3.8460 3.4710 -0.0048 9 6 3.5386 2.1247 0.0010 10 6 4.6425 1.0988 0.0014 11 1 4.3374 0.2369 0.5948 12 7 5.8574 1.6871 0.5810 13 6 4.9220 0.6610 -1.4133 14 1 4.3570 1.0838 -2.2309 15 6 5.8996 -0.2783 -1.6639 16 7 6.5880 -0.7927 -0.6683 17 14 6.2466 -0.8204 -3.4175 18 1 7.3351 -1.8304 -3.4172 19 1 5.0187 -1.4154 -4.0037 20 1 6.6621 0.3541 -4.2256 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.1616 2.3520 0.0107 25 1 0.7202 4.7484 0.0001 26 1 4.8783 3.7886 -0.0089 27 1 6.1607 2.4885 0.0483 28 1 5.7148 1.9298 1.5499 29 1 6.4080 -0.5109 0.2424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372281.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:17 Heat of formation + Delta-G solvation = -5.237421 kcal Electronic energy + Delta-G solvation = -14757.998954 eV Core-core repulsion = 12217.945577 eV Total energy + Delta-G solvation = -2540.053377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49593 -37.63837 -36.64466 -33.59887 -32.06072 -31.10375 -29.67153 -27.61469 -24.76781 -23.76596 -22.06085 -19.01110 -18.63177 -17.36505 -16.97479 -16.25717 -15.75472 -15.51189 -15.28287 -15.08760 -14.82742 -14.26874 -13.93739 -13.89431 -13.47868 -12.95841 -12.63098 -12.61186 -12.51446 -12.34340 -11.93195 -11.81386 -10.95225 -10.85661 -10.48816 -10.38996 -9.82096 -9.37171 -8.38109 -8.25618 -6.17321 0.00691 0.27639 0.63207 1.10529 1.56902 1.63770 1.65342 1.82847 2.49914 2.68694 3.36086 3.74231 3.82824 4.10922 4.27723 4.28363 4.29323 4.36150 4.50493 4.80048 4.85830 4.94184 5.08041 5.17212 5.42721 5.68567 5.94746 6.24352 6.66427 6.80083 7.01391 7.70774 9.03485 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.008509 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.339925 B = 3289.713940 C = 4317.617014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.138 6.138 3 C -0.092 4.092 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.041 4.041 7 Cl -0.066 7.066 8 C -0.113 4.113 9 C -0.071 4.071 10 C 0.247 3.753 11 H 0.022 0.978 12 N -0.837 5.837 13 C -0.596 4.596 14 H 0.030 0.970 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 1.103 2.897 18 H -0.286 1.286 19 H -0.276 1.276 20 H -0.278 1.278 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.122 0.878 24 H 0.160 0.840 25 H 0.163 0.837 26 H 0.127 0.873 27 H 0.330 0.670 28 H 0.318 0.682 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 8.593 2.046 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.106 5.894 3 C -0.206 4.206 4 C -0.144 4.144 5 C -0.124 4.124 6 C -0.071 4.071 7 Cl -0.037 7.037 8 C -0.134 4.134 9 C -0.079 4.079 10 C 0.137 3.863 11 H 0.040 0.960 12 N -0.366 5.366 13 C -0.635 4.635 14 H 0.048 0.952 15 C -0.209 4.209 16 N -0.555 5.555 17 Si 0.927 3.073 18 H -0.212 1.212 19 H -0.201 1.201 20 H -0.203 1.203 21 H 0.115 0.885 22 H 0.112 0.888 23 H 0.140 0.860 24 H 0.178 0.822 25 H 0.181 0.819 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.650 5.937 1.001 13.114 hybrid contribution -1.890 3.032 1.145 3.752 sum -13.540 8.970 2.146 16.383 Atomic orbital electron populations 1.23851 0.92891 1.08331 1.06422 1.86546 1.08092 1.03237 1.91509 1.21877 0.96173 0.97589 1.04951 1.21402 0.99046 0.91922 1.02016 1.21121 0.94570 0.96213 1.00504 1.20916 0.94784 0.84849 1.06546 1.98337 1.94629 1.13729 1.97024 1.20786 0.99341 0.91316 1.01947 1.20977 0.95078 0.95445 0.96438 1.18017 0.83284 0.89671 0.95338 0.96001 1.59203 1.36118 1.36495 1.04786 1.21690 1.23180 1.27538 0.91108 0.95158 1.26772 0.92823 0.93609 1.07731 1.70664 1.40126 1.42722 1.01963 0.83123 0.76466 0.76354 0.71351 1.21170 1.20146 1.20349 0.88465 0.88840 0.85958 0.82245 0.81903 0.85528 0.85561 0.87051 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.15 113.37 1.04 -2.09 15 2 S -0.14 -4.98 20.85 -56.49 -1.18 -6.16 15 3 C -0.09 -3.41 6.11 22.62 0.14 -3.27 15 4 C -0.12 -3.40 9.36 22.41 0.21 -3.19 15 5 C -0.10 -2.77 9.82 22.27 0.22 -2.55 15 6 C -0.04 -1.28 6.32 22.35 0.14 -1.14 15 7 Cl -0.07 -1.74 28.95 -2.72 -0.08 -1.82 15 8 C -0.11 -4.18 9.05 22.27 0.20 -3.97 15 9 C -0.07 -3.00 5.00 -19.73 -0.10 -3.09 15 10 C 0.25 12.21 1.93 43.42 0.08 12.29 15 11 H 0.02 1.23 6.89 -2.39 -0.02 1.21 15 12 N -0.84 -38.76 7.39 -174.96 -1.29 -40.05 15 13 C -0.60 -33.22 8.69 25.60 0.22 -33.00 15 14 H 0.03 1.74 7.74 -2.91 -0.02 1.71 15 15 C -0.01 -0.32 5.39 84.65 0.46 0.14 15 16 N -0.92 -56.27 13.51 21.45 0.29 -55.98 15 17 Si 1.10 51.47 29.90 68.60 2.05 53.52 15 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 15 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 21 H 0.10 1.69 7.74 -2.39 -0.02 1.67 15 22 H 0.09 1.76 7.76 -2.39 -0.02 1.74 15 23 H 0.12 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.16 3.34 5.88 -2.91 -0.02 3.32 15 25 H 0.16 3.16 8.06 -2.91 -0.02 3.14 15 26 H 0.13 4.64 6.29 -2.91 -0.02 4.62 15 27 H 0.33 14.70 7.20 -89.70 -0.65 14.05 15 28 H 0.32 13.02 9.06 -89.69 -0.81 12.20 15 29 H 0.28 17.19 6.39 -92.70 -0.59 16.60 15 Total: -1.00 -65.93 273.88 2.32 -63.61 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.09 Total: 26.76 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 2.61 Total: -39.88 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -1.00 Total: -96.03 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.05 Total: 53.52 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -1.18 Total: -6.16 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -65.93 2.32 -63.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372281.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.377 kcal (2) G-P(sol) polarization free energy of solvation -65.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds