Wall clock time and date at job start Mon Mar 30 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 103.00119 * 2 1 4 4 C 1.38986 * 120.06683 * 359.97438 * 3 2 1 5 5 C 1.38063 * 119.93546 * 180.02562 * 4 3 2 6 6 C 1.38421 * 120.06274 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 119.92964 * 179.97438 * 6 5 4 8 8 C 1.38375 * 120.13679 * 359.72523 * 6 5 4 9 9 C 1.38101 * 120.06584 * 0.54926 * 8 6 5 10 10 C 1.50700 * 120.03478 * 179.72004 * 9 8 6 11 11 H 1.08994 * 109.47551 * 219.72787 * 10 9 8 12 12 N 1.46900 * 109.47395 * 339.73249 * 10 9 8 13 13 C 1.50702 * 109.46869 * 99.72841 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 H 1.08999 * 109.46514 * 299.99446 * 1 2 3 22 22 H 1.08999 * 109.47029 * 59.99457 * 1 2 3 23 23 H 1.09002 * 109.46780 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.03038 * 0.04001 * 4 3 2 25 25 H 1.07990 * 119.96951 * 180.02562 * 5 4 3 26 26 H 1.08003 * 119.96634 * 180.30237 * 8 6 5 27 27 H 1.00907 * 110.99792 * 296.04461 * 12 10 9 28 28 H 1.00903 * 111.00086 * 59.99217 * 12 10 9 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6659 -0.0005 5 6 1.5088 4.0104 -0.0011 6 6 2.8330 4.4135 -0.0005 7 17 3.2235 6.1050 -0.0019 8 6 3.8461 3.4710 0.0063 9 6 3.5386 2.1247 0.0011 10 6 4.6425 1.0988 0.0022 11 1 4.3732 0.2745 -0.6581 12 7 5.8875 1.7186 -0.4711 13 6 4.8418 0.5768 1.4018 14 1 4.2300 0.9502 2.2096 15 6 5.8010 -0.3821 1.6499 16 7 6.5458 -0.8371 0.6661 17 14 6.0428 -1.0346 3.3834 18 1 5.1653 -2.2137 3.5953 19 1 7.4612 -1.4335 3.5688 20 1 5.6942 0.0245 4.3642 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.1618 2.3519 -0.0003 25 1 0.7203 4.7483 -0.0011 26 1 4.8783 3.7886 0.0116 27 1 5.7998 2.0191 -1.4304 28 1 6.1585 2.4863 0.1249 29 1 7.2209 -1.5114 0.8407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372285.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:19 Heat of formation + Delta-G solvation = 1.581766 kcal Electronic energy + Delta-G solvation = -14726.176101 eV Core-core repulsion = 12186.418425 eV Total energy + Delta-G solvation = -2539.757675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38901 -37.53597 -36.32951 -33.70478 -31.99522 -30.96188 -29.62145 -27.96948 -24.81323 -23.66532 -21.79573 -18.63108 -18.49902 -17.31725 -16.78341 -16.47983 -15.89587 -15.46656 -15.14196 -14.78170 -14.68669 -14.26604 -14.13998 -13.51162 -13.30254 -13.05093 -12.76613 -12.67475 -12.47228 -12.31476 -12.03602 -11.66843 -11.29604 -10.81128 -10.52617 -10.34193 -9.77956 -8.96192 -8.22641 -7.92619 -6.12197 0.08824 0.36097 0.71845 1.17258 1.44154 1.45502 1.53974 1.73528 2.46759 2.64590 3.30705 3.82565 3.92129 4.23637 4.33705 4.33939 4.44429 4.46760 4.60712 4.88053 4.94595 5.06961 5.20146 5.26925 5.58529 5.76813 5.79976 6.19146 6.66802 7.09581 7.23663 7.57637 9.09815 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.008406 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.478273 B = 3330.107274 C = 4341.877672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.130 6.130 3 C -0.091 4.091 4 C -0.121 4.121 5 C -0.106 4.106 6 C -0.042 4.042 7 Cl -0.069 7.069 8 C -0.114 4.114 9 C -0.076 4.076 10 C 0.264 3.736 11 H 0.026 0.974 12 N -0.820 5.820 13 C -0.520 4.520 14 H 0.040 0.960 15 C 0.040 3.960 16 N -0.879 5.879 17 Si 0.940 3.060 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.158 0.842 25 H 0.161 0.839 26 H 0.129 0.871 27 H 0.312 0.688 28 H 0.324 0.676 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 8.165 -2.118 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.114 5.886 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.126 4.126 6 C -0.072 4.072 7 Cl -0.040 7.040 8 C -0.135 4.135 9 C -0.084 4.084 10 C 0.153 3.847 11 H 0.043 0.957 12 N -0.348 5.348 13 C -0.559 4.559 14 H 0.058 0.942 15 C -0.163 4.163 16 N -0.515 5.515 17 Si 0.766 3.234 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.198 1.198 21 H 0.110 0.890 22 H 0.114 0.886 23 H 0.139 0.861 24 H 0.176 0.824 25 H 0.179 0.821 26 H 0.147 0.853 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.690 6.365 -2.042 13.466 hybrid contribution -0.720 1.575 0.739 1.883 sum -12.410 7.939 -1.303 14.790 Atomic orbital electron populations 1.23854 0.93510 1.08176 1.06300 1.86633 1.07370 1.03166 1.91415 1.21874 0.96199 0.97551 1.04882 1.21386 0.99013 0.91947 1.02185 1.21092 0.94561 0.96182 1.00770 1.20922 0.94814 0.84739 1.06703 1.98334 1.94637 1.13957 1.97050 1.20830 0.99409 0.91318 1.01947 1.21243 0.95434 0.95660 0.96060 1.17838 0.82311 0.89043 0.95474 0.95652 1.58974 1.36102 1.35714 1.04039 1.20814 1.19332 1.22914 0.92882 0.94178 1.25535 0.95354 0.96105 0.99311 1.70217 1.20992 1.28124 1.32191 0.85867 0.77034 0.78728 0.81745 1.20237 1.21131 1.19847 0.88951 0.88591 0.86115 0.82440 0.82137 0.85318 0.87656 0.86288 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.15 113.37 1.04 -2.21 15 2 S -0.13 -4.71 20.71 -56.49 -1.17 -5.88 15 3 C -0.09 -3.37 6.10 22.62 0.14 -3.23 15 4 C -0.12 -3.45 9.36 22.41 0.21 -3.24 15 5 C -0.11 -2.84 9.82 22.27 0.22 -2.62 15 6 C -0.04 -1.30 6.32 22.35 0.14 -1.16 15 7 Cl -0.07 -1.81 28.95 -2.72 -0.08 -1.89 15 8 C -0.11 -4.19 9.03 22.27 0.20 -3.98 15 9 C -0.08 -3.17 5.03 -19.73 -0.10 -3.26 15 10 C 0.26 13.08 2.28 43.42 0.10 13.18 15 11 H 0.03 1.44 7.25 -2.39 -0.02 1.42 15 12 N -0.82 -38.66 8.03 -174.96 -1.41 -40.07 15 13 C -0.52 -28.50 8.38 25.60 0.21 -28.28 15 14 H 0.04 2.25 7.74 -2.91 -0.02 2.23 15 15 C 0.04 2.26 5.39 84.66 0.46 2.72 15 16 N -0.88 -51.67 12.78 21.45 0.27 -51.40 15 17 Si 0.94 44.41 29.54 68.60 2.03 46.43 15 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 20 H -0.27 -12.70 7.11 99.48 0.71 -12.00 15 21 H 0.09 1.76 7.75 -2.39 -0.02 1.74 15 22 H 0.10 1.71 7.75 -2.39 -0.02 1.69 15 23 H 0.12 2.19 8.14 -2.39 -0.02 2.18 15 24 H 0.16 3.35 5.88 -2.91 -0.02 3.33 15 25 H 0.16 3.17 8.06 -2.92 -0.02 3.15 15 26 H 0.13 4.64 6.25 -2.91 -0.02 4.62 15 27 H 0.31 13.17 9.06 -89.69 -0.81 12.36 15 28 H 0.32 14.47 7.28 -89.69 -0.65 13.82 15 29 H 0.25 14.34 8.31 -92.70 -0.77 13.57 15 Total: -1.00 -63.46 275.65 1.99 -61.47 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.27 Total: 23.45 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 2.62 Total: -32.11 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -1.13 Total: -91.46 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.17 Total: -5.88 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -63.46 1.99 -61.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372285.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.050 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds