Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48494 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47031 * 300.00186 * 3 2 1 6 6 H 1.48501 * 109.47061 * 59.99807 * 3 2 1 7 7 C 1.37886 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00047 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.26975 * 57.93574 * 9 7 2 11 11 C 1.53746 * 110.30003 * 180.02562 * 9 7 2 12 12 C 1.51212 * 104.54597 * 118.92629 * 11 9 7 13 13 C 1.38637 * 108.53107 * 0.02562 * 12 11 9 14 14 C 1.39635 * 119.03364 * 180.02562 * 13 12 11 15 15 C 1.37882 * 120.27608 * 0.02562 * 14 13 12 16 16 C 1.38252 * 120.22982 * 0.24066 * 15 14 13 17 17 C 1.38127 * 130.99827 * 180.02562 * 12 11 9 18 18 C 1.50704 * 119.92101 * 359.97438 * 17 12 11 19 19 F 1.39899 * 109.47353 * 179.97438 * 18 17 12 20 20 F 1.39899 * 109.46982 * 300.00102 * 18 17 12 21 21 F 1.39901 * 109.46911 * 59.99656 * 18 17 12 22 22 N 1.39578 * 111.64786 * 359.97438 * 13 12 11 23 23 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.41948 * 0.16014 * 11 9 7 25 25 H 1.09003 * 110.52649 * 237.74895 * 11 9 7 26 26 H 1.07996 * 119.86454 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.88152 * 179.97438 * 15 14 13 28 28 H 1.07998 * 120.08651 * 179.72160 * 16 15 14 29 29 H 0.96998 * 124.95948 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.5923 -2.5549 -0.8662 11 6 2.2329 -3.6821 0.0018 12 6 1.9298 -4.4260 1.2830 13 6 0.9053 -3.7659 1.9438 14 6 0.4491 -4.2712 3.1630 15 6 1.0129 -5.4100 3.6981 16 6 2.0378 -6.0576 3.0337 17 6 2.4905 -5.5671 1.8227 18 6 3.6032 -6.2751 1.0934 19 9 4.0054 -7.3945 1.8299 20 9 3.1500 -6.6830 -0.1657 21 9 4.6876 -5.4047 0.9393 22 7 0.4781 -2.6403 1.2376 23 1 -0.4850 0.8400 0.0004 24 1 3.2619 -3.3223 0.0053 25 1 2.0585 -4.3246 -0.8614 26 1 -0.3480 -3.7674 3.6895 27 1 0.6554 -5.7951 4.6417 28 1 2.4808 -6.9469 3.4571 29 1 -0.2277 -2.0395 1.5235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260377456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -127.358123 kcal Electronic energy + Delta-G solvation = -19139.583474 eV Core-core repulsion = 15612.057784 eV Total energy + Delta-G solvation = -3527.525690 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.77188 -47.31706 -47.20525 -39.65201 -35.91548 -32.60463 -31.98344 -28.82141 -28.58223 -25.68763 -24.69864 -21.40247 -21.05931 -20.50334 -18.08844 -18.03338 -17.76775 -16.86467 -15.61168 -15.20440 -14.61943 -14.53556 -14.24416 -14.08670 -13.77494 -13.63726 -13.42109 -13.40424 -13.08419 -12.37735 -12.20607 -11.97487 -11.81237 -11.36890 -11.18247 -10.97637 -10.76294 -10.45232 -10.31974 -9.75702 -9.15007 -8.78139 -8.48122 -6.53926 -6.19609 -4.41066 1.55799 2.09589 3.09468 3.15040 3.24662 3.29590 4.12648 4.16963 4.23921 4.39591 4.52376 4.87300 5.15741 5.34394 5.45112 5.64149 5.86520 6.05744 6.14553 6.24235 6.27921 6.70381 6.70755 6.90455 6.99632 7.25990 7.29946 7.64244 7.95790 8.14073 8.69668 8.99696 9.30005 10.75055 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.006822 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.222552 B = 4103.117814 C = 4668.271772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.261 3.739 10 H 0.046 0.954 11 C -0.085 4.085 12 C -0.134 4.134 13 C 0.220 3.780 14 C -0.187 4.187 15 C -0.073 4.073 16 C -0.169 4.169 17 C -0.124 4.124 18 C 0.507 3.493 19 F -0.185 7.185 20 F -0.180 7.180 21 F -0.178 7.178 22 N -0.694 5.694 23 H 0.266 0.734 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -9.634 4.209 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.160 3.840 10 H 0.064 0.936 11 C -0.122 4.122 12 C -0.140 4.140 13 C 0.107 3.893 14 C -0.211 4.211 15 C -0.092 4.092 16 C -0.191 4.191 17 C -0.126 4.126 18 C 0.453 3.547 19 F -0.166 7.166 20 F -0.162 7.162 21 F -0.160 7.160 22 N -0.317 5.317 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.223 -9.345 3.958 10.389 hybrid contribution 0.282 1.124 0.107 1.163 sum 2.505 -8.222 4.064 9.507 Atomic orbital electron populations 1.69858 1.06093 1.27427 1.49509 1.25084 0.94962 0.99705 0.93492 0.86409 0.80317 0.82852 0.77734 1.19444 1.20722 1.20854 1.21591 0.93422 0.90149 1.51490 0.91522 1.19151 0.88634 0.92270 0.83955 0.93637 1.21367 1.01867 0.96089 0.92869 1.19719 0.99089 0.95719 0.99440 1.18596 0.91585 0.87986 0.91161 1.20436 1.04722 0.99683 0.96307 1.20516 0.95371 0.94568 0.98772 1.20336 1.01087 1.02440 0.95191 1.19095 0.98273 0.97669 0.97573 1.18488 0.82386 0.76600 0.77183 1.93111 1.91773 1.54602 1.77154 1.93179 1.89010 1.90966 1.43015 1.93196 1.57590 1.69486 1.95701 1.46153 1.38877 1.23834 1.22825 0.92436 0.89983 0.91356 0.86613 0.86071 0.85814 0.74790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.45 12.46 55.43 0.69 -22.76 15 2 C 0.07 1.84 5.42 -17.82 -0.10 1.75 15 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.53 -13.62 8.76 -34.44 -0.30 -13.93 15 8 H 0.07 1.73 7.35 -52.49 -0.39 1.34 15 9 C 0.26 6.20 3.49 -68.68 -0.24 5.96 15 10 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 11 C -0.08 -1.77 6.06 -27.24 -0.17 -1.94 15 12 C -0.13 -2.69 5.94 -104.26 -0.62 -3.31 15 13 C 0.22 4.46 7.03 -83.66 -0.59 3.88 15 14 C -0.19 -3.21 10.07 -39.19 -0.39 -3.60 15 15 C -0.07 -1.11 10.02 -39.71 -0.40 -1.51 15 16 C -0.17 -2.68 9.44 -39.56 -0.37 -3.05 15 17 C -0.12 -2.22 5.37 -104.65 -0.56 -2.78 15 18 C 0.51 8.54 3.09 36.01 0.11 8.65 15 19 F -0.18 -2.84 15.97 2.25 0.04 -2.80 15 20 F -0.18 -3.06 17.13 2.25 0.04 -3.02 15 21 F -0.18 -3.13 17.13 2.25 0.04 -3.09 15 22 N -0.69 -15.51 5.95 -52.79 -0.31 -15.82 15 23 H 0.27 6.68 8.31 -40.82 -0.34 6.35 15 24 H 0.08 1.75 7.42 -51.92 -0.39 1.36 15 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 27 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 28 H 0.12 1.68 7.16 -52.49 -0.38 1.31 15 29 H 0.41 9.37 8.27 -40.82 -0.34 9.03 15 LS Contribution 265.09 15.07 3.99 3.99 Total: -1.00 -25.87 265.09 -6.47 -32.34 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -2.31 Total: 5.86 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.63 Total: -9.89 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.38 Total: -38.59 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 0.11 Total: -8.92 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -25.87 -6.47 -32.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260377456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.016 kcal (2) G-P(sol) polarization free energy of solvation -25.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds