Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48494 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47031 * 300.00186 * 3 2 1 6 6 H 1.48501 * 109.47061 * 59.99807 * 3 2 1 7 7 C 1.37886 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00047 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.26975 * 57.93574 * 9 7 2 11 11 C 1.53746 * 110.30003 * 180.02562 * 9 7 2 12 12 C 1.51212 * 104.54597 * 118.92629 * 11 9 7 13 13 C 1.38637 * 108.53107 * 0.02562 * 12 11 9 14 14 C 1.39635 * 119.03364 * 180.02562 * 13 12 11 15 15 C 1.37882 * 120.27608 * 0.02562 * 14 13 12 16 16 C 1.38252 * 120.22982 * 0.24066 * 15 14 13 17 17 C 1.38127 * 130.99827 * 180.02562 * 12 11 9 18 18 C 1.50704 * 119.92101 * 359.97438 * 17 12 11 19 19 F 1.39899 * 109.47353 * 179.97438 * 18 17 12 20 20 F 1.39899 * 109.46982 * 300.00102 * 18 17 12 21 21 F 1.39901 * 109.46911 * 59.99656 * 18 17 12 22 22 N 1.39578 * 111.64786 * 359.97438 * 13 12 11 23 23 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.41948 * 0.16014 * 11 9 7 25 25 H 1.09003 * 110.52649 * 237.74895 * 11 9 7 26 26 H 1.07996 * 119.86454 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.88152 * 179.97438 * 15 14 13 28 28 H 1.07998 * 120.08651 * 179.72160 * 16 15 14 29 29 H 0.96998 * 124.95948 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.5923 -2.5549 -0.8662 11 6 2.2329 -3.6821 0.0018 12 6 1.9298 -4.4260 1.2830 13 6 0.9053 -3.7659 1.9438 14 6 0.4491 -4.2712 3.1630 15 6 1.0129 -5.4100 3.6981 16 6 2.0378 -6.0576 3.0337 17 6 2.4905 -5.5671 1.8227 18 6 3.6032 -6.2751 1.0934 19 9 4.0054 -7.3945 1.8299 20 9 3.1500 -6.6830 -0.1657 21 9 4.6876 -5.4047 0.9393 22 7 0.4781 -2.6403 1.2376 23 1 -0.4850 0.8400 0.0004 24 1 3.2619 -3.3223 0.0053 25 1 2.0585 -4.3246 -0.8614 26 1 -0.3480 -3.7674 3.6895 27 1 0.6554 -5.7951 4.6417 28 1 2.4808 -6.9469 3.4571 29 1 -0.2277 -2.0395 1.5235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260377456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -140.935566 kcal Electronic energy + Delta-G solvation = -19140.172236 eV Core-core repulsion = 15612.057784 eV Total energy + Delta-G solvation = -3528.114452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.10032 -48.61433 -48.56573 -41.14100 -37.45882 -34.48948 -33.42040 -30.45168 -30.11628 -27.27806 -26.29605 -22.90726 -22.52468 -22.10567 -19.42997 -19.41698 -19.15038 -18.74901 -17.16058 -16.69831 -16.25499 -16.07081 -15.69061 -15.43378 -15.29646 -15.00918 -14.76829 -14.74082 -14.51664 -14.07534 -13.68576 -13.57319 -13.31572 -12.99381 -12.73096 -12.66258 -12.57049 -12.11575 -11.78803 -11.55965 -10.83797 -10.71309 -9.84619 -8.37642 -7.91189 -6.42617 0.16993 0.72295 1.36350 1.40483 1.51309 1.75157 2.35229 2.71074 2.79564 2.81735 3.15699 3.31466 3.52040 3.86189 4.10995 4.22645 4.50951 4.57707 4.60123 4.70953 4.87152 5.11761 5.29373 5.41239 5.55182 5.58567 5.66170 5.92874 6.07439 6.43643 6.76747 7.26750 7.36981 8.79366 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.006822 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.222552 B = 4103.117814 C = 4668.271772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.030 3.970 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.261 3.739 10 H 0.016 0.984 11 C -0.076 4.076 12 C -0.158 4.158 13 C 0.191 3.809 14 C -0.181 4.181 15 C -0.062 4.062 16 C -0.154 4.154 17 C -0.134 4.134 18 C 0.511 3.489 19 F -0.173 7.173 20 F -0.183 7.183 21 F -0.185 7.185 22 N -0.711 5.711 23 H 0.268 0.732 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.134 0.866 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 -10.888 6.143 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.159 3.841 10 H 0.034 0.966 11 C -0.113 4.113 12 C -0.164 4.164 13 C 0.081 3.919 14 C -0.205 4.205 15 C -0.080 4.080 16 C -0.175 4.175 17 C -0.136 4.136 18 C 0.457 3.543 19 F -0.154 7.154 20 F -0.164 7.164 21 F -0.166 7.166 22 N -0.335 5.335 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.152 0.848 27 H 0.185 0.815 28 H 0.173 0.827 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.563 -10.644 5.914 12.444 hybrid contribution 0.178 1.357 -0.401 1.427 sum 2.741 -9.287 5.512 11.142 Atomic orbital electron populations 1.69947 1.07040 1.28068 1.50042 1.25745 0.95733 1.02424 0.93242 0.85492 0.79004 0.79294 0.77756 1.19480 1.20243 1.20529 1.21817 0.93200 0.91632 1.51913 0.92456 1.18909 0.88648 0.92680 0.83900 0.96624 1.21149 1.00383 0.95482 0.94310 1.19704 1.00307 0.97110 0.99260 1.18891 0.92559 0.87840 0.92634 1.20821 1.04680 1.00078 0.94901 1.21039 0.94064 0.93025 0.99918 1.20840 1.00221 1.02673 0.93765 1.19307 0.98569 0.97204 0.98524 1.18366 0.82020 0.76763 0.77132 1.93133 1.91625 1.53845 1.76782 1.93176 1.89035 1.90962 1.43261 1.93186 1.57867 1.69846 1.95736 1.45771 1.39489 1.25245 1.23014 0.92316 0.91039 0.90803 0.84770 0.81452 0.82744 0.75546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.18 12.46 21.45 0.27 -48.91 15 2 C 0.03 1.58 5.42 84.66 0.46 2.04 15 3 Si 0.96 42.02 29.54 68.60 2.03 44.05 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 6 H -0.28 -12.03 7.11 99.48 0.71 -11.33 15 7 C -0.55 -29.21 8.76 25.60 0.22 -28.99 15 8 H 0.06 3.08 7.35 -2.91 -0.02 3.06 15 9 C 0.26 12.95 3.49 44.49 0.16 13.11 15 10 H 0.02 0.86 8.14 -2.39 -0.02 0.84 15 11 C -0.08 -3.28 6.06 30.26 0.18 -3.10 15 12 C -0.16 -6.29 5.94 -19.63 -0.12 -6.41 15 13 C 0.19 7.66 7.03 38.34 0.27 7.93 15 14 C -0.18 -5.73 10.07 22.52 0.23 -5.51 15 15 C -0.06 -1.59 10.02 22.19 0.22 -1.36 15 16 C -0.15 -4.24 9.44 22.28 0.21 -4.03 15 17 C -0.13 -4.53 5.37 -19.88 -0.11 -4.64 15 18 C 0.51 16.30 3.09 71.24 0.22 16.52 15 19 F -0.17 -4.78 15.97 44.97 0.72 -4.07 15 20 F -0.18 -6.01 17.13 44.97 0.77 -5.24 15 21 F -0.18 -6.32 17.13 44.97 0.77 -5.55 15 22 N -0.71 -32.67 5.95 -320.94 -1.91 -34.58 15 23 H 0.27 13.67 8.31 -92.71 -0.77 12.90 15 24 H 0.07 3.16 7.42 -2.38 -0.02 3.15 15 25 H 0.07 2.99 8.14 -2.39 -0.02 2.97 15 26 H 0.13 3.71 8.06 -2.91 -0.02 3.69 15 27 H 0.17 2.80 8.06 -2.91 -0.02 2.78 15 28 H 0.15 3.34 7.16 -2.91 -0.02 3.32 15 29 H 0.41 19.11 8.27 -92.71 -0.77 18.34 15 Total: -1.00 -56.22 265.09 5.03 -51.20 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.44 Total: 17.53 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 1.95 Total: -14.43 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.64 Total: -83.49 kcal Atomic # 9 Polarization: -17.11 SS G_CDS: 2.26 Total: -14.86 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -56.22 5.03 -51.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260377456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.740 kcal (2) G-P(sol) polarization free energy of solvation -56.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds