Wall clock time and date at job start Mon Mar 30 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08999 * 110.37676 * 60.64236 * 9 7 2 11 11 C 1.53749 * 110.41880 * 298.26560 * 9 7 2 12 12 N 1.46538 * 105.18331 * 241.23529 * 11 9 7 13 13 C 1.39576 * 110.08564 * 0.02562 * 12 11 9 14 14 C 1.39676 * 129.31692 * 180.02562 * 13 12 11 15 15 C 1.37830 * 120.27926 * 179.97438 * 14 13 12 16 16 C 1.38302 * 120.23309 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.08385 * 179.97438 * 16 15 14 18 18 F 1.39896 * 109.47454 * 359.97438 * 17 16 15 19 19 F 1.39902 * 109.47376 * 120.00077 * 17 16 15 20 20 F 1.39903 * 109.47168 * 239.99706 * 17 16 15 21 21 C 1.38229 * 119.83127 * 0.02562 * 16 15 14 22 22 C 1.38176 * 120.15376 * 359.97438 * 21 16 15 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.08992 * 110.30294 * 0.16818 * 11 9 7 25 25 H 1.09004 * 110.29608 * 122.21529 * 11 9 7 26 26 H 0.96998 * 124.95174 * 180.02562 * 12 11 9 27 27 H 1.08000 * 119.86176 * 359.97084 * 14 13 12 28 28 H 1.08000 * 119.88338 * 180.02562 * 15 14 13 29 29 H 1.08001 * 119.92757 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8874 -0.6957 0.8993 11 6 4.0533 -0.5081 -1.2591 12 7 4.8279 -1.5401 -1.9536 13 6 4.7902 -2.7344 -1.2322 14 6 5.3856 -3.9638 -1.5241 15 6 5.2253 -5.0338 -0.6702 16 6 4.4729 -4.8983 0.4824 17 6 4.2994 -6.0705 1.4133 18 9 4.9864 -7.1771 0.9029 19 9 4.8106 -5.7445 2.6741 20 9 2.9394 -6.3784 1.5270 21 6 3.8796 -3.6852 0.7776 22 6 4.0374 -2.6096 -0.0752 23 1 -0.4849 0.8400 0.0004 24 1 3.2298 -0.1670 -1.8864 25 1 4.6948 0.3307 -0.9890 26 1 5.2981 -1.4119 -2.7922 27 1 5.9741 -4.0764 -2.4227 28 1 5.6889 -5.9813 -0.9019 29 1 3.2914 -3.5778 1.6770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404386.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:41 Heat of formation + Delta-G solvation = -117.338420 kcal Electronic energy + Delta-G solvation = -18909.971076 eV Core-core repulsion = 15382.879873 eV Total energy + Delta-G solvation = -3527.091203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.78091 -47.33322 -47.21434 -39.89306 -36.18991 -33.10002 -31.35443 -29.94275 -28.78558 -25.28399 -24.30087 -22.56282 -21.15116 -20.17152 -18.09861 -18.07304 -17.50429 -16.94770 -16.78716 -15.44688 -14.67924 -14.19848 -14.13290 -13.92756 -13.71344 -13.68461 -13.50406 -13.42275 -13.30400 -13.03459 -12.74257 -12.29062 -11.87419 -11.55102 -11.12711 -10.94842 -10.88949 -10.21145 -10.02866 -9.83389 -9.40180 -8.74553 -8.34294 -6.96002 -6.21287 -4.23187 1.65411 1.85547 3.09530 3.12611 3.22522 3.24870 3.83544 4.07042 4.23412 4.24954 4.45141 4.87211 5.02592 5.22673 5.34702 5.64334 5.80193 5.87503 5.90802 6.02075 6.34540 6.37491 6.60361 6.76814 6.86336 7.00471 7.17909 7.51184 7.54124 8.22738 8.36650 8.84384 9.36817 10.91126 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.006707 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.041428 B = 4173.900430 C = 4787.647130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.869 3.131 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.044 3.956 10 H 0.054 0.946 11 C 0.100 3.900 12 N -0.734 5.734 13 C 0.222 3.778 14 C -0.196 4.196 15 C -0.042 4.042 16 C -0.251 4.251 17 C 0.516 3.484 18 F -0.187 7.187 19 F -0.184 7.184 20 F -0.181 7.181 21 C -0.011 4.011 22 C -0.119 4.119 23 H 0.266 0.734 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.404 0.596 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.107 -6.764 -1.317 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.129 4.129 3 Si 0.696 3.304 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.025 3.975 10 H 0.071 0.929 11 C -0.024 4.024 12 N -0.362 5.362 13 C 0.115 3.885 14 C -0.219 4.219 15 C -0.061 4.061 16 C -0.254 4.254 17 C 0.462 3.538 18 F -0.168 7.168 19 F -0.165 7.165 20 F -0.162 7.162 21 C -0.031 4.031 22 C -0.124 4.124 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.240 0.760 27 H 0.137 0.863 28 H 0.146 0.854 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.861 -6.468 -1.305 12.708 hybrid contribution 0.446 0.849 -0.341 1.017 sum 11.306 -5.620 -1.646 12.733 Atomic orbital electron populations 1.69876 1.06194 1.27158 1.49617 1.25003 0.94730 0.98797 0.94338 0.87071 0.80579 0.84100 0.78653 1.20042 1.21236 1.18619 1.20866 0.87148 0.94976 1.51700 0.90156 1.18824 0.97625 0.87750 0.93271 0.92865 1.22777 0.93666 0.90028 0.95904 1.44948 1.56637 1.09299 1.25310 1.18639 0.91725 0.87060 0.91061 1.20106 1.07920 0.91414 1.02478 1.20341 0.95542 0.98229 0.91939 1.19398 1.12192 0.94032 0.99794 1.18277 0.73555 0.82590 0.79369 1.93102 1.80036 1.56628 1.87043 1.93178 1.87121 1.92599 1.43650 1.93204 1.32897 1.93894 1.96227 1.19968 0.94862 0.89578 0.98673 1.20086 1.00060 0.97457 0.94793 0.92343 0.90681 0.93512 0.75966 0.86264 0.85406 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.96 55.43 0.77 -25.28 15 2 C 0.07 2.01 5.34 -17.82 -0.10 1.91 15 3 Si 0.87 19.78 24.66 -169.99 -4.19 15.59 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.26 -5.62 6.48 56.52 0.37 -5.25 15 7 C -0.51 -13.57 9.02 -34.44 -0.31 -13.88 15 8 H 0.08 2.38 8.01 -52.49 -0.42 1.96 15 9 C 0.04 0.99 2.48 -92.28 -0.23 0.76 15 10 H 0.05 1.20 7.29 -51.93 -0.38 0.82 15 11 C 0.10 1.98 5.60 -3.63 -0.02 1.96 15 12 N -0.73 -12.43 6.53 -58.12 -0.38 -12.81 15 13 C 0.22 4.01 7.03 -83.66 -0.59 3.43 15 14 C -0.20 -3.02 10.07 -39.19 -0.39 -3.41 15 15 C -0.04 -0.63 9.41 -39.71 -0.37 -1.01 15 16 C -0.25 -4.24 5.37 -104.61 -0.56 -4.80 15 17 C 0.52 8.17 3.32 36.00 0.12 8.29 15 18 F -0.19 -2.72 15.98 2.25 0.04 -2.68 15 19 F -0.18 -2.92 17.24 2.25 0.04 -2.88 15 20 F -0.18 -3.04 17.24 2.25 0.04 -3.00 15 21 C -0.01 -0.22 9.59 -39.61 -0.38 -0.60 15 22 C -0.12 -2.45 5.50 -104.26 -0.57 -3.02 15 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 24 H 0.08 1.59 6.46 -51.93 -0.34 1.26 15 25 H 0.05 0.85 7.47 -51.93 -0.39 0.46 15 26 H 0.40 5.37 8.96 -40.82 -0.37 5.01 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.13 1.61 7.16 -52.49 -0.38 1.23 15 29 H 0.13 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 258.81 15.07 3.90 3.90 Total: -1.00 -28.37 258.81 -5.47 -33.84 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -2.28 Total: 3.69 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.41 Total: -10.36 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.39 Total: -38.09 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 0.11 Total: -8.57 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.19 Total: 15.59 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.37 -5.47 -33.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404386.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.500 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds