Wall clock time and date at job start Mon Mar 30 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08999 * 110.37676 * 60.64236 * 9 7 2 11 11 C 1.53749 * 110.41880 * 298.26560 * 9 7 2 12 12 N 1.46538 * 105.18331 * 241.23529 * 11 9 7 13 13 C 1.39576 * 110.08564 * 0.02562 * 12 11 9 14 14 C 1.39676 * 129.31692 * 180.02562 * 13 12 11 15 15 C 1.37830 * 120.27926 * 179.97438 * 14 13 12 16 16 C 1.38302 * 120.23309 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.08385 * 179.97438 * 16 15 14 18 18 F 1.39896 * 109.47454 * 359.97438 * 17 16 15 19 19 F 1.39902 * 109.47376 * 120.00077 * 17 16 15 20 20 F 1.39903 * 109.47168 * 239.99706 * 17 16 15 21 21 C 1.38229 * 119.83127 * 0.02562 * 16 15 14 22 22 C 1.38176 * 120.15376 * 359.97438 * 21 16 15 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.08992 * 110.30294 * 0.16818 * 11 9 7 25 25 H 1.09004 * 110.29608 * 122.21529 * 11 9 7 26 26 H 0.96998 * 124.95174 * 180.02562 * 12 11 9 27 27 H 1.08000 * 119.86176 * 359.97084 * 14 13 12 28 28 H 1.08000 * 119.88338 * 180.02562 * 15 14 13 29 29 H 1.08001 * 119.92757 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8874 -0.6957 0.8993 11 6 4.0533 -0.5081 -1.2591 12 7 4.8279 -1.5401 -1.9536 13 6 4.7902 -2.7344 -1.2322 14 6 5.3856 -3.9638 -1.5241 15 6 5.2253 -5.0338 -0.6702 16 6 4.4729 -4.8983 0.4824 17 6 4.2994 -6.0705 1.4133 18 9 4.9864 -7.1771 0.9029 19 9 4.8106 -5.7445 2.6741 20 9 2.9394 -6.3784 1.5270 21 6 3.8796 -3.6852 0.7776 22 6 4.0374 -2.6096 -0.0752 23 1 -0.4849 0.8400 0.0004 24 1 3.2298 -0.1670 -1.8864 25 1 4.6948 0.3307 -0.9890 26 1 5.2981 -1.4119 -2.7922 27 1 5.9741 -4.0764 -2.4227 28 1 5.6889 -5.9813 -0.9019 29 1 3.2914 -3.5778 1.6770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404386.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:41 Heat of formation + Delta-G solvation = -135.481109 kcal Electronic energy + Delta-G solvation = -18910.757802 eV Core-core repulsion = 15382.879873 eV Total energy + Delta-G solvation = -3527.877929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.05967 -48.57860 -48.52773 -41.31629 -37.60972 -34.98493 -32.99274 -31.31234 -30.36023 -26.75319 -26.05938 -23.94280 -22.58740 -21.72976 -19.38789 -19.36655 -18.87099 -18.82575 -18.25388 -16.90189 -16.40174 -15.68143 -15.44321 -15.36941 -15.14898 -14.98567 -14.81890 -14.74029 -14.70921 -14.60817 -14.21909 -13.71823 -13.39872 -13.09797 -12.87879 -12.59117 -12.36961 -11.96639 -11.61077 -11.49520 -11.14338 -10.79756 -9.73562 -8.37748 -8.28591 -6.38313 0.29184 0.49785 1.32742 1.38517 1.47061 1.80479 2.32073 2.49364 2.69587 2.92992 3.02059 3.17923 3.57173 3.86745 4.01574 4.15675 4.41746 4.43033 4.48135 4.59175 4.80645 5.01370 5.22219 5.27822 5.38103 5.51532 5.57830 5.70147 6.11924 6.28240 6.66926 7.05006 7.26424 8.85844 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.006707 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.041428 B = 4173.900430 C = 4787.647130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.253 1.253 5 H -0.292 1.292 6 H -0.238 1.238 7 C -0.512 4.512 8 H 0.028 0.972 9 C 0.039 3.961 10 H 0.050 0.950 11 C 0.106 3.894 12 N -0.722 5.722 13 C 0.215 3.785 14 C -0.181 4.181 15 C -0.032 4.032 16 C -0.257 4.257 17 C 0.521 3.479 18 F -0.174 7.174 19 F -0.185 7.185 20 F -0.190 7.190 21 C -0.027 4.027 22 C -0.161 4.161 23 H 0.268 0.732 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.424 0.576 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.167 -6.824 -2.727 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.178 1.178 5 H -0.218 1.218 6 H -0.161 1.161 7 C -0.550 4.550 8 H 0.046 0.954 9 C 0.020 3.980 10 H 0.068 0.932 11 C -0.018 4.018 12 N -0.353 5.353 13 C 0.108 3.892 14 C -0.204 4.204 15 C -0.050 4.050 16 C -0.260 4.260 17 C 0.468 3.532 18 F -0.155 7.155 19 F -0.166 7.166 20 F -0.171 7.171 21 C -0.047 4.047 22 C -0.166 4.166 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.265 0.735 27 H 0.178 0.822 28 H 0.181 0.819 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.959 -6.551 -2.738 15.661 hybrid contribution -0.540 0.690 0.127 0.886 sum 13.419 -5.861 -2.610 14.874 Atomic orbital electron populations 1.70053 1.08448 1.28311 1.51818 1.25933 0.95458 1.03122 0.93734 0.85970 0.79831 0.78255 0.79934 1.17767 1.21831 1.16078 1.21021 0.89882 0.93044 1.51085 0.95378 1.18719 0.94536 0.90097 0.94675 0.93230 1.22424 0.94034 0.91034 0.94353 1.44736 1.56374 1.08240 1.25963 1.18826 0.91722 0.88350 0.90273 1.20528 1.06694 0.89764 1.03411 1.20791 0.94052 0.99649 0.90536 1.19529 1.12303 0.93334 1.00854 1.18120 0.73264 0.82650 0.79210 1.93124 1.79659 1.55903 1.86836 1.93177 1.87062 1.92659 1.43740 1.93190 1.33730 1.93946 1.96259 1.19970 0.95523 0.90734 0.98438 1.20088 1.02503 0.96940 0.97047 0.92320 0.92324 0.90952 0.73515 0.82154 0.81923 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 13.96 21.45 0.30 -57.56 15 2 C 0.02 0.85 5.34 84.66 0.45 1.30 15 3 Si 0.94 40.72 24.66 68.60 1.69 42.41 15 4 H -0.25 -10.10 7.11 99.48 0.71 -9.40 15 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.24 -9.32 6.48 99.48 0.64 -8.67 15 7 C -0.51 -28.58 9.02 25.60 0.23 -28.35 15 8 H 0.03 1.79 8.01 -2.91 -0.02 1.77 15 9 C 0.04 1.74 2.48 -11.87 -0.03 1.71 15 10 H 0.05 2.23 7.29 -2.39 -0.02 2.21 15 11 C 0.11 4.00 5.60 86.62 0.49 4.48 15 12 N -0.72 -22.36 6.53 -337.78 -2.20 -24.56 15 13 C 0.22 7.28 7.03 38.34 0.27 7.55 15 14 C -0.18 -4.83 10.07 22.52 0.23 -4.60 15 15 C -0.03 -0.85 9.41 22.19 0.21 -0.64 15 16 C -0.26 -8.36 5.37 -19.85 -0.11 -8.46 15 17 C 0.52 15.90 3.32 71.23 0.24 16.14 15 18 F -0.17 -4.61 15.98 44.97 0.72 -3.89 15 19 F -0.18 -5.73 17.24 44.97 0.78 -4.95 15 20 F -0.19 -6.37 17.24 44.97 0.78 -5.59 15 21 C -0.03 -1.07 9.59 22.25 0.21 -0.85 15 22 C -0.16 -6.61 5.50 -19.63 -0.11 -6.71 15 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 24 H 0.06 2.40 6.46 -2.39 -0.02 2.39 15 25 H 0.07 2.37 7.47 -2.39 -0.02 2.35 15 26 H 0.42 9.61 8.96 -92.71 -0.83 8.78 15 27 H 0.16 2.99 8.06 -2.91 -0.02 2.97 15 28 H 0.16 3.25 7.16 -2.91 -0.02 3.23 15 29 H 0.11 4.54 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -64.58 258.81 4.45 -60.13 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.31 Total: 12.46 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 2.08 Total: -18.44 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.91 Total: -82.13 kcal Atomic # 9 Polarization: -16.70 SS G_CDS: 2.27 Total: -14.43 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.69 Total: 42.41 kcal Total: -64.58 4.45 -60.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404386.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.350 kcal (2) G-P(sol) polarization free energy of solvation -64.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds