Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76196 * 103.00019 * 2 1 4 4 C 1.38938 * 120.08533 * 359.97438 * 3 2 1 5 5 C 1.38095 * 119.93510 * 180.02562 * 4 3 2 6 6 C 1.38319 * 120.09691 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.91493 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.47482 * 340.00041 * 7 6 5 9 9 N 1.46904 * 109.47160 * 220.00382 * 7 6 5 10 10 C 1.50701 * 109.47373 * 99.99964 * 7 6 5 11 11 H 1.08002 * 119.99704 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00149 * 179.97438 * 10 7 6 13 13 N 1.31518 * 120.00021 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00060 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47253 * 59.99693 * 14 12 10 16 16 H 1.48493 * 109.47012 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.46562 * 299.99985 * 14 12 10 18 18 C 1.38287 * 120.16350 * 0.02562 * 6 5 4 19 19 C 1.38188 * 120.07078 * 359.97438 * 18 6 5 20 20 Cl 1.73603 * 120.04908 * 179.97438 * 19 18 6 21 21 H 1.09004 * 109.46831 * 59.99809 * 1 2 3 22 22 H 1.08991 * 109.47474 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47369 * 300.00791 * 1 2 3 24 24 H 1.07997 * 120.03451 * 0.05138 * 4 3 2 25 25 H 1.07991 * 119.95490 * 179.72355 * 5 4 3 26 26 H 1.00900 * 111.00379 * 176.05147 * 9 7 6 27 27 H 1.00904 * 110.99565 * 299.99886 * 9 7 6 28 28 H 0.97001 * 119.99674 * 180.02562 * 13 12 10 29 29 H 1.08008 * 119.96123 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1957 2.6659 -0.0005 5 6 1.5099 4.0106 -0.0011 6 6 2.8330 4.4138 -0.0016 7 6 3.1712 5.8823 -0.0016 8 1 2.3115 6.4532 -0.3527 9 7 4.3145 6.1215 -0.8924 10 6 3.5249 6.3164 1.3975 11 1 3.5071 5.6003 2.2058 12 6 3.8724 7.6273 1.6455 13 7 3.8946 8.4992 0.6611 14 14 4.3116 8.1652 3.3797 15 1 5.4826 7.3872 3.8576 16 1 4.6459 9.6120 3.3794 17 1 3.1558 7.9238 4.2804 18 6 3.8462 3.4726 -0.0021 19 6 3.5396 2.1252 -0.0016 20 17 4.8119 0.9441 -0.0030 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.1622 2.3523 -0.0001 25 1 0.7214 4.7486 -0.0060 26 1 4.5204 7.1069 -0.9599 27 1 5.1248 5.6029 -0.5879 28 1 4.1394 9.4215 0.8355 29 1 4.8782 3.7911 -0.0021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = -8.945263 kcal Electronic energy + Delta-G solvation = -14466.641794 eV Core-core repulsion = 11926.427632 eV Total energy + Delta-G solvation = -2540.214161 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33541 -37.56815 -36.49361 -33.64521 -31.87197 -31.20739 -29.57329 -27.99171 -25.05898 -23.54636 -21.84789 -18.84530 -18.59004 -17.47508 -16.64588 -16.34251 -15.82966 -15.67807 -15.07712 -14.76870 -14.69574 -14.29755 -14.08441 -13.57292 -13.29208 -13.10784 -12.85631 -12.66364 -12.42571 -12.32888 -12.05573 -11.96322 -11.59932 -11.04831 -10.76341 -10.44791 -9.75966 -9.24009 -8.34859 -8.08552 -6.39833 0.16665 0.30508 0.53635 1.13537 1.38275 1.39654 1.47287 1.55163 2.34474 2.68771 3.04149 3.79092 4.05648 4.23141 4.32540 4.35846 4.41670 4.59776 4.68375 4.77649 4.91806 5.08923 5.25264 5.28619 5.62296 5.77101 5.87624 6.06676 6.60508 6.88916 7.08101 7.36277 8.80217 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.005778 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.172768 B = 4844.983339 C = 5127.934746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.124 6.124 3 C -0.107 4.107 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.040 4.040 7 C 0.244 3.756 8 H 0.023 0.977 9 N -0.843 5.843 10 C -0.560 4.560 11 H 0.047 0.953 12 C 0.026 3.974 13 N -0.913 5.913 14 Si 0.956 3.044 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.274 1.274 18 C -0.092 4.092 19 C -0.029 4.029 20 Cl -0.060 7.060 21 H 0.093 0.907 22 H 0.130 0.870 23 H 0.092 0.908 24 H 0.160 0.840 25 H 0.134 0.866 26 H 0.347 0.653 27 H 0.317 0.683 28 H 0.269 0.731 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -14.147 -0.943 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.117 5.883 3 C -0.220 4.220 4 C -0.137 4.137 5 C -0.129 4.129 6 C -0.044 4.044 7 C 0.134 3.866 8 H 0.040 0.960 9 N -0.372 5.372 10 C -0.600 4.600 11 H 0.065 0.935 12 C -0.175 4.175 13 N -0.552 5.552 14 Si 0.782 3.218 15 H -0.200 1.200 16 H -0.206 1.206 17 H -0.199 1.199 18 C -0.113 4.113 19 C -0.061 4.061 20 Cl -0.031 7.031 21 H 0.112 0.888 22 H 0.148 0.852 23 H 0.110 0.890 24 H 0.178 0.822 25 H 0.152 0.848 26 H 0.162 0.838 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.341 -15.438 -1.577 16.412 hybrid contribution 0.232 2.222 1.720 2.819 sum -5.109 -13.216 0.143 14.170 Atomic orbital electron populations 1.23847 0.92028 1.08646 1.06581 1.85545 1.09468 1.00573 1.92737 1.21649 0.94106 0.98830 1.07442 1.21297 0.98971 0.91713 1.01671 1.21205 0.96044 0.96161 0.99537 1.20330 0.93209 0.96369 0.94444 1.17837 0.91621 0.86907 0.90224 0.95953 1.59521 1.08780 1.15541 1.53384 1.21962 1.47585 0.95067 0.95350 0.93514 1.25684 0.94661 0.96356 1.00750 1.69822 1.48408 1.04166 1.32842 0.85643 0.78694 0.77137 0.80357 1.19983 1.20629 1.19886 1.20721 1.00300 0.89925 1.00344 1.20453 0.88208 0.89956 1.07502 1.98324 1.50656 1.57220 1.96909 0.88768 0.85193 0.88953 0.82247 0.84769 0.83787 0.87255 0.92201 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.15 113.37 1.04 -1.12 15 2 S -0.12 -3.09 21.47 -56.49 -1.21 -4.30 15 3 C -0.11 -3.37 6.11 22.63 0.14 -3.23 15 4 C -0.11 -3.37 9.36 22.40 0.21 -3.16 15 5 C -0.11 -3.93 9.66 22.26 0.21 -3.72 15 6 C -0.04 -1.70 4.90 -19.84 -0.10 -1.80 15 7 C 0.24 11.98 2.95 43.42 0.13 12.11 15 8 H 0.02 1.21 8.00 -2.38 -0.02 1.19 15 9 N -0.84 -39.98 9.02 -174.95 -1.58 -41.56 15 10 C -0.56 -29.60 8.70 25.60 0.22 -29.37 15 11 H 0.05 2.51 7.74 -2.91 -0.02 2.49 15 12 C 0.03 1.38 5.38 84.65 0.46 1.84 15 13 N -0.91 -49.43 11.54 21.45 0.25 -49.19 15 14 Si 0.96 42.18 29.54 68.60 2.03 44.20 15 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 18 C -0.09 -3.66 9.06 22.27 0.20 -3.45 15 19 C -0.03 -1.01 6.34 22.45 0.14 -0.87 15 20 Cl -0.06 -1.89 27.84 -2.72 -0.08 -1.97 15 21 H 0.09 1.28 7.75 -2.39 -0.02 1.26 15 22 H 0.13 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.09 1.29 7.75 -2.39 -0.02 1.27 15 24 H 0.16 3.49 5.88 -2.91 -0.02 3.47 15 25 H 0.13 4.51 8.03 -2.92 -0.02 4.48 15 26 H 0.35 17.63 7.08 -89.69 -0.63 16.99 15 27 H 0.32 14.34 7.33 -89.69 -0.66 13.69 15 28 H 0.27 13.89 8.31 -92.71 -0.77 13.12 15 29 H 0.13 5.01 6.66 -2.91 -0.02 4.99 15 Total: -1.00 -57.13 274.99 1.96 -55.17 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.10 Total: 30.43 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 2.65 Total: -32.79 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -1.33 Total: -90.75 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -1.21 Total: -4.30 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -57.13 1.96 -55.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.224 kcal (2) G-P(sol) polarization free energy of solvation -57.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds