Wall clock time and date at job start Mon Mar 30 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76198 * 103.00234 * 2 1 4 4 C 1.39309 * 120.10059 * 270.02174 * 3 2 1 5 5 O 1.36013 * 120.06634 * 359.97438 * 4 3 2 6 6 C 1.38506 * 119.86206 * 179.97438 * 4 3 2 7 7 C 1.38311 * 120.06300 * 0.02562 * 6 4 3 8 8 C 1.38255 * 120.19656 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.92688 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46692 * 220.00035 * 9 8 7 11 11 N 1.46898 * 109.47195 * 339.99748 * 9 8 7 12 12 C 1.50693 * 109.47203 * 99.99926 * 9 8 7 13 13 H 1.08002 * 119.99940 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00258 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99979 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00337 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46631 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47065 * 120.00193 * 16 14 12 19 19 H 1.48494 * 109.47396 * 240.00537 * 16 14 12 20 20 C 1.38393 * 120.14087 * 0.02562 * 8 7 6 21 21 F 1.35101 * 120.03165 * 179.97438 * 20 8 7 22 22 H 1.08997 * 109.47522 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.47060 * 300.00177 * 1 2 3 24 24 H 1.09000 * 109.47294 * 59.99814 * 1 2 3 25 25 H 0.96700 * 113.99982 * 89.99715 * 5 4 3 26 26 H 1.08008 * 119.96928 * 179.97438 * 6 4 3 27 27 H 1.07996 * 119.89885 * 180.27381 * 7 6 4 28 28 H 1.00904 * 110.99864 * 60.00235 * 11 9 8 29 29 H 1.00893 * 111.00111 * 183.95586 * 11 9 8 30 30 H 0.96997 * 120.00489 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.3671 2.3977 -1.2052 5 8 2.2149 1.7384 -2.3851 6 6 2.6782 3.7473 -1.1995 7 6 2.8334 4.4175 0.0005 8 6 2.6784 3.7442 1.1980 9 6 2.8483 4.4805 2.5019 10 1 3.3801 3.8459 3.2109 11 7 3.6180 5.7106 2.2730 12 6 1.4937 4.8323 3.0605 13 1 0.5991 4.5511 2.5246 14 6 1.3962 5.5129 4.2555 15 7 2.4855 5.8557 4.9077 16 14 -0.2831 5.9495 4.9475 17 1 -1.3405 5.4555 4.0293 18 1 -0.4494 5.3156 6.2800 19 1 -0.3944 7.4241 5.0835 20 6 2.3676 2.3957 1.2019 21 9 2.2171 1.7399 2.3735 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.3101 1.7461 -2.7261 26 1 2.8005 4.2768 -2.1329 27 1 3.0716 5.4708 0.0019 28 1 3.1456 6.3163 1.6186 29 1 3.8010 6.1897 3.1419 30 1 2.4170 6.3349 5.7483 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260456377.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:10 Heat of formation + Delta-G solvation = -61.799175 kcal Electronic energy + Delta-G solvation = -17047.388892 eV Core-core repulsion = 14076.546438 eV Total energy + Delta-G solvation = -2970.842454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.24265 -39.29438 -36.80330 -34.37500 -31.57682 -30.31683 -28.87934 -28.62422 -26.03693 -23.31322 -22.44734 -20.51321 -18.49269 -16.77908 -16.64850 -16.43264 -16.09145 -15.15747 -14.91402 -14.56306 -14.27900 -13.94247 -13.38435 -13.18051 -13.01969 -12.86558 -12.55794 -12.31260 -11.81209 -11.30458 -11.07074 -10.99434 -10.88032 -10.73456 -10.19640 -10.00612 -9.81387 -8.79176 -8.46100 -7.99802 -7.51851 -7.35265 -6.20091 -4.36870 1.12642 1.55248 1.93778 2.81547 3.15041 3.24164 3.27677 3.84193 4.22073 4.26637 4.88908 5.02148 5.15953 5.21262 5.25268 5.44183 5.69759 5.76937 5.91861 6.10231 6.35060 6.47243 6.73439 6.79466 7.10459 7.48042 7.62953 7.72327 7.92047 8.51934 8.77184 8.95702 9.34817 10.78658 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.007138 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.542607 B = 3921.872677 C = 4450.697559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.129 6.129 3 C -0.195 4.195 4 C 0.146 3.854 5 O -0.483 6.483 6 C -0.166 4.166 7 C -0.046 4.046 8 C -0.077 4.077 9 C 0.243 3.757 10 H 0.056 0.944 11 N -0.849 5.849 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.069 3.931 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.158 3.842 21 F -0.116 7.116 22 H 0.101 0.899 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.384 0.616 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.312 0.688 29 H 0.360 0.640 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -5.260 -10.721 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.102 5.898 3 C -0.308 4.308 4 C 0.099 3.901 5 O -0.292 6.292 6 C -0.187 4.187 7 C -0.065 4.065 8 C -0.080 4.080 9 C 0.133 3.867 10 H 0.074 0.926 11 N -0.380 5.380 12 C -0.584 4.584 13 H 0.073 0.927 14 C -0.134 4.134 15 N -0.529 5.529 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.208 1.208 20 C 0.135 3.865 21 F -0.094 7.094 22 H 0.119 0.881 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.239 0.761 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.121 0.879 29 H 0.177 0.823 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.526 -6.743 -10.710 12.748 hybrid contribution -3.139 1.806 1.047 3.770 sum -4.665 -4.937 -9.663 11.812 Atomic orbital electron populations 1.23573 0.96025 1.06056 1.05059 1.85268 1.05451 1.01665 1.97419 1.21956 1.15801 0.98687 0.94315 1.18034 0.98532 0.89495 0.84084 1.84873 1.33284 1.76182 1.34898 1.21367 1.05178 0.92961 0.99154 1.20978 0.94734 1.00730 0.90050 1.20687 0.96955 0.91382 0.98996 1.17905 0.92967 0.89315 0.86519 0.92641 1.59556 1.50075 1.09772 1.18574 1.21720 0.92629 1.37448 1.06604 0.92676 1.24998 0.97143 0.95220 0.96073 1.69732 1.27362 1.39445 1.16377 0.86428 0.83793 0.78083 0.79086 1.19771 1.20676 1.20806 1.17447 0.98576 0.89959 0.80499 1.91534 1.92200 1.80619 1.45003 0.88070 0.90305 0.90889 0.76089 0.85082 0.84005 0.87862 0.82341 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 10.72 101.05 1.08 -0.64 16 2 S -0.13 -2.08 21.41 -107.50 -2.30 -4.38 16 3 C -0.19 -3.54 5.71 -38.93 -0.22 -3.77 16 4 C 0.15 2.36 6.70 -39.08 -0.26 2.10 16 5 O -0.48 -6.54 12.88 -19.78 -0.25 -6.79 16 6 C -0.17 -2.59 9.98 -39.46 -0.39 -2.98 16 7 C -0.05 -0.83 9.25 -39.55 -0.37 -1.20 16 8 C -0.08 -1.64 5.03 -104.56 -0.53 -2.17 16 9 C 0.24 5.94 2.66 -70.02 -0.19 5.76 16 10 H 0.06 1.54 7.94 -51.93 -0.41 1.13 16 11 N -0.85 -19.22 8.66 -6.65 -0.06 -19.28 16 12 C -0.54 -14.31 8.70 -34.44 -0.30 -14.61 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.07 1.81 5.38 -17.82 -0.10 1.72 16 15 N -0.89 -24.04 11.54 55.43 0.64 -23.40 16 16 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.16 3.30 7.21 -39.27 -0.28 3.02 16 21 F -0.12 -2.60 16.14 2.25 0.04 -2.56 16 22 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 24 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 25 H 0.38 3.35 9.06 45.56 0.41 3.77 16 26 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.14 2.35 6.23 -52.49 -0.33 2.02 16 28 H 0.31 6.48 7.27 -39.29 -0.29 6.19 16 29 H 0.36 8.80 7.08 -39.30 -0.28 8.52 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -28.83 278.94 -6.43 -35.25 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -2.12 Total: 14.15 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.55 Total: -12.77 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.58 Total: -42.68 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.25 Total: -6.79 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -2.30 Total: -4.38 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.83 -6.43 -35.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456377.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.545 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds