Wall clock time and date at job start Mon Mar 30 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76198 * 103.00234 * 2 1 4 4 C 1.39309 * 120.10059 * 270.02174 * 3 2 1 5 5 O 1.36013 * 120.06634 * 359.97438 * 4 3 2 6 6 C 1.38506 * 119.86206 * 179.97438 * 4 3 2 7 7 C 1.38311 * 120.06300 * 0.02562 * 6 4 3 8 8 C 1.38255 * 120.19656 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.92688 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46692 * 220.00035 * 9 8 7 11 11 N 1.46898 * 109.47195 * 339.99748 * 9 8 7 12 12 C 1.50693 * 109.47203 * 99.99926 * 9 8 7 13 13 H 1.08002 * 119.99940 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00258 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99979 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00337 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46631 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47065 * 120.00193 * 16 14 12 19 19 H 1.48494 * 109.47396 * 240.00537 * 16 14 12 20 20 C 1.38393 * 120.14087 * 0.02562 * 8 7 6 21 21 F 1.35101 * 120.03165 * 179.97438 * 20 8 7 22 22 H 1.08997 * 109.47522 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.47060 * 300.00177 * 1 2 3 24 24 H 1.09000 * 109.47294 * 59.99814 * 1 2 3 25 25 H 0.96700 * 113.99982 * 89.99715 * 5 4 3 26 26 H 1.08008 * 119.96928 * 179.97438 * 6 4 3 27 27 H 1.07996 * 119.89885 * 180.27381 * 7 6 4 28 28 H 1.00904 * 110.99864 * 60.00235 * 11 9 8 29 29 H 1.00893 * 111.00111 * 183.95586 * 11 9 8 30 30 H 0.96997 * 120.00489 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.3671 2.3977 -1.2052 5 8 2.2149 1.7384 -2.3851 6 6 2.6782 3.7473 -1.1995 7 6 2.8334 4.4175 0.0005 8 6 2.6784 3.7442 1.1980 9 6 2.8483 4.4805 2.5019 10 1 3.3801 3.8459 3.2109 11 7 3.6180 5.7106 2.2730 12 6 1.4937 4.8323 3.0605 13 1 0.5991 4.5511 2.5246 14 6 1.3962 5.5129 4.2555 15 7 2.4855 5.8557 4.9077 16 14 -0.2831 5.9495 4.9475 17 1 -1.3405 5.4555 4.0293 18 1 -0.4494 5.3156 6.2800 19 1 -0.3944 7.4241 5.0835 20 6 2.3676 2.3957 1.2019 21 9 2.2171 1.7399 2.3735 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.3101 1.7461 -2.7261 26 1 2.8005 4.2768 -2.1329 27 1 3.0716 5.4708 0.0019 28 1 3.1456 6.3163 1.6186 29 1 3.8010 6.1897 3.1419 30 1 2.4170 6.3349 5.7483 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456377.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:10 Heat of formation + Delta-G solvation = -82.619255 kcal Electronic energy + Delta-G solvation = -17048.291718 eV Core-core repulsion = 14076.546438 eV Total energy + Delta-G solvation = -2971.745281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.86625 -40.62687 -38.19154 -36.09361 -33.45678 -31.70311 -30.34846 -29.71033 -27.95284 -24.92986 -23.88317 -22.12791 -19.76868 -18.72422 -18.10761 -17.90547 -17.50550 -16.81227 -16.48999 -16.20997 -15.69516 -15.21977 -14.83081 -14.64176 -14.37477 -14.31885 -14.04845 -13.67429 -13.45997 -13.01792 -12.77854 -12.72536 -12.54860 -12.03896 -11.89045 -11.69999 -11.28354 -10.78868 -9.81747 -9.52585 -9.22825 -8.76375 -8.18258 -6.44245 -0.20042 0.15825 0.65954 1.32890 1.36283 1.46537 1.63709 2.30328 2.51664 2.95130 2.99828 3.51658 3.84307 4.01809 4.24876 4.28407 4.31706 4.45717 4.60112 4.81614 4.88454 5.02054 5.18283 5.29309 5.57197 5.57713 5.76455 5.95044 6.56516 6.75615 6.81840 7.05942 7.32002 8.77322 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.007138 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.542607 B = 3921.872677 C = 4450.697559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.156 6.156 3 C -0.200 4.200 4 C 0.163 3.837 5 O -0.480 6.480 6 C -0.149 4.149 7 C -0.046 4.046 8 C -0.108 4.108 9 C 0.250 3.750 10 H 0.007 0.993 11 N -0.838 5.838 12 C -0.556 4.556 13 H 0.045 0.955 14 C 0.024 3.976 15 N -0.914 5.914 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.126 3.874 21 F -0.138 7.138 22 H 0.128 0.872 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.410 0.590 26 H 0.173 0.827 27 H 0.154 0.846 28 H 0.324 0.676 29 H 0.349 0.651 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -5.207 -13.151 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.075 5.925 3 C -0.313 4.313 4 C 0.115 3.885 5 O -0.293 6.293 6 C -0.169 4.169 7 C -0.064 4.064 8 C -0.111 4.111 9 C 0.139 3.861 10 H 0.025 0.975 11 N -0.368 5.368 12 C -0.596 4.596 13 H 0.063 0.937 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.785 3.215 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.103 3.897 21 F -0.116 7.116 22 H 0.146 0.854 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.270 0.730 26 H 0.190 0.810 27 H 0.171 0.829 28 H 0.135 0.865 29 H 0.164 0.836 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.865 -6.689 -13.174 15.050 hybrid contribution -2.740 1.689 1.679 3.630 sum -5.606 -5.000 -11.495 13.732 Atomic orbital electron populations 1.23657 0.92387 1.07971 1.05496 1.85284 1.09248 1.00538 1.97441 1.22147 1.15481 0.99636 0.94024 1.18095 0.96592 0.89580 0.84216 1.84818 1.35532 1.75695 1.33252 1.21697 1.02846 0.92729 0.99639 1.21123 0.94273 1.01275 0.89742 1.20491 1.00056 0.91846 0.98685 1.17575 0.91566 0.89315 0.87644 0.97534 1.59487 1.49837 1.09416 1.18047 1.21912 0.93165 1.37474 1.07025 0.93663 1.25734 1.00396 0.95207 0.96363 1.69832 1.28995 1.39852 1.16643 0.85486 0.79818 0.78166 0.78036 1.19645 1.20796 1.19711 1.17741 1.00756 0.90301 0.80864 1.91462 1.92735 1.81004 1.46444 0.85389 0.91757 0.88517 0.73035 0.80996 0.82887 0.86525 0.83637 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 10.72 113.37 1.21 -1.63 16 2 S -0.16 -4.82 21.41 -56.49 -1.21 -6.03 16 3 C -0.20 -7.09 5.71 22.69 0.13 -6.96 16 4 C 0.16 4.78 6.70 22.59 0.15 4.93 16 5 O -0.48 -10.96 12.88 -93.69 -1.21 -12.16 16 6 C -0.15 -4.13 9.98 22.35 0.22 -3.91 16 7 C -0.05 -1.57 9.25 22.29 0.21 -1.37 16 8 C -0.11 -4.67 5.03 -19.82 -0.10 -4.77 16 9 C 0.25 12.70 2.66 43.42 0.12 12.81 16 10 H 0.01 0.40 7.94 -2.39 -0.02 0.38 16 11 N -0.84 -38.79 8.66 -174.96 -1.52 -40.31 16 12 C -0.56 -30.05 8.70 25.60 0.22 -29.82 16 13 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 14 C 0.02 1.27 5.38 84.65 0.46 1.72 16 15 N -0.91 -50.49 11.54 21.45 0.25 -50.24 16 16 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C 0.13 5.39 7.21 22.47 0.16 5.55 16 21 F -0.14 -6.56 16.14 44.97 0.73 -5.84 16 22 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.41 5.12 9.06 -74.06 -0.67 4.45 16 26 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.15 4.80 6.23 -2.91 -0.02 4.78 16 28 H 0.32 13.47 7.27 -89.69 -0.65 12.81 16 29 H 0.35 17.55 7.08 -89.70 -0.63 16.91 16 30 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -64.42 278.94 1.10 -63.32 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.75 Total: 30.09 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 2.78 Total: -23.44 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -1.27 Total: -90.55 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.21 Total: -12.16 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.73 Total: -5.84 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -1.21 Total: -6.03 kcal Total: -64.42 1.10 -63.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456377.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.298 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds