Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76204 * 102.99945 * 2 1 4 4 C 1.38998 * 120.07282 * 0.02562 * 3 2 1 5 5 C 1.38073 * 119.94596 * 179.97438 * 4 3 2 6 6 C 1.38304 * 120.09156 * 359.97438 * 5 4 3 7 7 C 1.38405 * 120.14520 * 359.75223 * 6 5 4 8 8 Cl 1.73598 * 119.97045 * 180.25271 * 7 6 5 9 9 C 1.38218 * 120.05388 * 0.50378 * 7 6 5 10 10 C 1.50696 * 120.04484 * 179.77170 * 9 7 6 11 11 H 1.09001 * 109.47478 * 168.73490 * 10 9 7 12 12 N 1.46900 * 109.47342 * 48.73248 * 10 9 7 13 13 C 1.50708 * 109.47174 * 288.73253 * 10 9 7 14 14 H 1.07994 * 119.99595 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00197 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00102 * 179.97438 * 15 13 10 17 17 Si 1.86802 * 119.99702 * 359.72553 * 15 13 10 18 18 H 1.48504 * 109.47096 * 270.27013 * 17 15 13 19 19 H 1.48499 * 109.47559 * 30.27483 * 17 15 13 20 20 H 1.48504 * 109.47093 * 150.27656 * 17 15 13 21 21 H 1.09006 * 109.47623 * 300.00233 * 1 2 3 22 22 H 1.08999 * 109.47444 * 59.99868 * 1 2 3 23 23 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 24 24 H 1.08004 * 120.02988 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.95364 * 180.02562 * 5 4 3 26 26 H 1.07992 * 119.92752 * 179.97438 * 6 5 4 27 27 H 1.00895 * 110.99762 * 284.94993 * 12 10 9 28 28 H 1.00897 * 110.99569 * 48.90704 * 12 10 9 29 29 H 0.97002 * 120.00090 * 179.72570 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1950 2.6661 0.0005 5 6 1.5085 4.0108 0.0011 6 6 2.8314 4.4143 0.0016 7 6 3.8454 3.4724 0.0068 8 17 5.5043 3.9840 0.0141 9 6 3.5384 2.1247 0.0009 10 6 4.6427 1.0993 0.0014 11 1 4.2225 0.1128 0.1971 12 7 5.6193 1.4318 1.0471 13 6 5.3262 1.0966 -1.3418 14 1 4.9939 1.7698 -2.1181 15 6 6.3752 0.2340 -1.5798 16 7 6.9713 0.2313 -2.7520 17 14 6.9540 -0.9260 -0.2348 18 1 8.0043 -0.2590 0.5760 19 1 5.8071 -1.2834 0.6382 20 1 7.5110 -2.1578 -0.8494 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 0.1615 2.3522 0.0005 25 1 0.7197 4.7484 0.0019 26 1 3.0736 5.4667 0.0016 27 1 6.1956 2.2118 0.7688 28 1 5.1592 1.6174 1.9257 29 1 7.7118 -0.3728 -2.9181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260545707.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 23.065918 kcal Electronic energy + Delta-G solvation = -15039.321054 eV Core-core repulsion = 12500.495001 eV Total energy + Delta-G solvation = -2538.826052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.11032 -36.00626 -34.87265 -31.83351 -30.88137 -29.79000 -28.61439 -26.20931 -22.98750 -22.61150 -20.21414 -17.42446 -16.93163 -15.81591 -15.41617 -14.79535 -14.48869 -14.02232 -13.84952 -13.69533 -13.43999 -13.03448 -12.54538 -12.31054 -11.90246 -11.77219 -11.29043 -11.14822 -10.61521 -10.43004 -10.26163 -9.96326 -9.56462 -9.39217 -9.17423 -8.47203 -8.23418 -7.54479 -7.02989 -5.96933 -4.06085 1.36954 1.58407 1.77881 2.65882 2.74673 3.61779 3.64978 3.81312 3.86187 4.69142 5.02780 5.12035 5.13941 5.17434 5.27755 5.39380 5.64952 5.71409 5.80367 6.02079 6.12543 6.37444 6.49457 6.53366 6.98559 7.14311 7.56819 8.20842 8.36320 8.75307 9.02178 9.64555 11.12263 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.011026 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.864070 B = 2538.741789 C = 3580.549097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 S -0.075 6.075 3 C -0.080 4.080 4 C -0.134 4.134 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.016 4.016 8 Cl -0.049 7.049 9 C -0.043 4.043 10 C 0.216 3.784 11 H 0.062 0.938 12 N -0.849 5.849 13 C -0.510 4.510 14 H 0.073 0.927 15 C 0.084 3.916 16 N -0.896 5.896 17 Si 0.924 3.076 18 H -0.280 1.280 19 H -0.267 1.267 20 H -0.317 1.317 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.345 0.655 28 H 0.309 0.691 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 5.385 7.376 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.168 5.832 3 C -0.194 4.194 4 C -0.159 4.159 5 C -0.131 4.131 6 C -0.142 4.142 7 C -0.045 4.045 8 Cl -0.020 7.020 9 C -0.051 4.051 10 C 0.106 3.894 11 H 0.079 0.921 12 N -0.385 5.385 13 C -0.548 4.548 14 H 0.091 0.909 15 C -0.120 4.120 16 N -0.533 5.533 17 Si 0.756 3.244 18 H -0.207 1.207 19 H -0.192 1.192 20 H -0.246 1.246 21 H 0.096 0.904 22 H 0.099 0.901 23 H 0.122 0.878 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.166 0.834 28 H 0.121 0.879 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.851 3.554 7.142 13.468 hybrid contribution -0.904 1.623 0.531 1.932 sum -11.755 5.177 7.673 14.961 Atomic orbital electron populations 1.23784 0.97993 1.06543 1.04949 1.86050 1.02817 1.02308 1.92014 1.21585 0.95497 0.97065 1.05261 1.21121 0.97957 0.93191 1.03605 1.20768 0.95558 0.95241 1.01558 1.20985 0.91920 0.98942 1.02357 1.20662 0.85790 0.93311 1.04721 1.98312 1.17364 1.89715 1.96567 1.20884 0.94743 0.94762 0.94688 1.18788 0.86087 0.91441 0.93059 0.92075 1.59530 1.25499 1.48479 1.05006 1.20623 1.16484 1.22711 0.95008 0.90874 1.24932 0.95277 0.96381 0.95406 1.69938 1.22815 1.38073 1.22495 0.86034 0.79413 0.77992 0.80998 1.20673 1.19219 1.24619 0.90410 0.90132 0.87794 0.86006 0.85621 0.85461 0.83420 0.87921 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.15 101.05 0.92 -0.94 15 2 S -0.07 -1.28 20.53 -107.50 -2.21 -3.49 15 3 C -0.08 -1.47 6.11 -39.04 -0.24 -1.71 15 4 C -0.13 -2.01 9.36 -39.36 -0.37 -2.38 15 5 C -0.11 -1.55 10.04 -39.62 -0.40 -1.95 15 6 C -0.12 -1.88 9.83 -39.50 -0.39 -2.27 15 7 C -0.02 -0.30 6.14 -39.53 -0.24 -0.55 15 8 Cl -0.05 -0.93 24.19 -51.86 -1.25 -2.18 15 9 C -0.04 -0.88 4.76 -104.38 -0.50 -1.38 15 10 C 0.22 5.14 2.09 -70.01 -0.15 5.00 15 11 H 0.06 1.53 5.21 -51.93 -0.27 1.26 15 12 N -0.85 -18.99 6.51 -6.65 -0.04 -19.03 15 13 C -0.51 -14.31 8.22 -34.44 -0.28 -14.60 15 14 H 0.07 2.26 7.98 -52.49 -0.42 1.84 15 15 C 0.08 2.47 5.47 -17.82 -0.10 2.37 15 16 N -0.90 -27.69 13.96 55.43 0.77 -26.92 15 17 Si 0.92 24.23 26.02 -169.99 -4.42 19.81 15 18 H -0.28 -7.34 7.11 56.52 0.40 -6.94 15 19 H -0.27 -6.88 6.55 56.52 0.37 -6.51 15 20 H -0.32 -8.35 7.11 56.52 0.40 -7.95 15 21 H 0.08 0.77 7.75 -51.92 -0.40 0.37 15 22 H 0.08 0.85 7.75 -51.92 -0.40 0.45 15 23 H 0.10 0.99 8.14 -51.92 -0.42 0.57 15 24 H 0.12 1.47 5.88 -52.48 -0.31 1.16 15 25 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 26 H 0.13 1.66 8.06 -52.49 -0.42 1.24 15 27 H 0.34 7.68 5.26 -39.29 -0.21 7.47 15 28 H 0.31 6.07 8.89 -39.29 -0.35 5.72 15 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 15 LS Contribution 264.41 15.07 3.98 3.98 Total: -1.00 -31.59 264.41 -7.70 -39.29 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.79 Total: 6.94 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -1.74 Total: -18.40 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.73 Total: -45.95 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.42 Total: 19.81 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.21 Total: -3.49 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.25 Total: -2.18 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.59 -7.70 -39.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545707.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.355 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds