Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76204 * 102.99945 * 2 1 4 4 C 1.38998 * 120.07282 * 0.02562 * 3 2 1 5 5 C 1.38073 * 119.94596 * 179.97438 * 4 3 2 6 6 C 1.38304 * 120.09156 * 359.97438 * 5 4 3 7 7 C 1.38405 * 120.14520 * 359.75223 * 6 5 4 8 8 Cl 1.73598 * 119.97045 * 180.25271 * 7 6 5 9 9 C 1.38218 * 120.05388 * 0.50378 * 7 6 5 10 10 C 1.50696 * 120.04484 * 179.77170 * 9 7 6 11 11 H 1.09001 * 109.47478 * 168.73490 * 10 9 7 12 12 N 1.46900 * 109.47342 * 48.73248 * 10 9 7 13 13 C 1.50708 * 109.47174 * 288.73253 * 10 9 7 14 14 H 1.07994 * 119.99595 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00197 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00102 * 179.97438 * 15 13 10 17 17 Si 1.86802 * 119.99702 * 359.72553 * 15 13 10 18 18 H 1.48504 * 109.47096 * 270.27013 * 17 15 13 19 19 H 1.48499 * 109.47559 * 30.27483 * 17 15 13 20 20 H 1.48504 * 109.47093 * 150.27656 * 17 15 13 21 21 H 1.09006 * 109.47623 * 300.00233 * 1 2 3 22 22 H 1.08999 * 109.47444 * 59.99868 * 1 2 3 23 23 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 24 24 H 1.08004 * 120.02988 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.95364 * 180.02562 * 5 4 3 26 26 H 1.07992 * 119.92752 * 179.97438 * 6 5 4 27 27 H 1.00895 * 110.99762 * 284.94993 * 12 10 9 28 28 H 1.00897 * 110.99569 * 48.90704 * 12 10 9 29 29 H 0.97002 * 120.00090 * 179.72570 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1950 2.6661 0.0005 5 6 1.5085 4.0108 0.0011 6 6 2.8314 4.4143 0.0016 7 6 3.8454 3.4724 0.0068 8 17 5.5043 3.9840 0.0141 9 6 3.5384 2.1247 0.0009 10 6 4.6427 1.0993 0.0014 11 1 4.2225 0.1128 0.1971 12 7 5.6193 1.4318 1.0471 13 6 5.3262 1.0966 -1.3418 14 1 4.9939 1.7698 -2.1181 15 6 6.3752 0.2340 -1.5798 16 7 6.9713 0.2313 -2.7520 17 14 6.9540 -0.9260 -0.2348 18 1 8.0043 -0.2590 0.5760 19 1 5.8071 -1.2834 0.6382 20 1 7.5110 -2.1578 -0.8494 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 0.1615 2.3522 0.0005 25 1 0.7197 4.7484 0.0019 26 1 3.0736 5.4667 0.0016 27 1 6.1956 2.2118 0.7688 28 1 5.1592 1.6174 1.9257 29 1 7.7118 -0.3728 -2.9181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260545707.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 1.604453 kcal Electronic energy + Delta-G solvation = -15040.251692 eV Core-core repulsion = 12500.495001 eV Total energy + Delta-G solvation = -2539.756691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46097 -37.42564 -36.61098 -33.97043 -32.10578 -31.22384 -29.58120 -28.23298 -24.61031 -23.88980 -21.82978 -19.06527 -18.67348 -17.30510 -16.89563 -16.46948 -15.87291 -15.73185 -15.22114 -14.92101 -14.79006 -14.39987 -14.19314 -13.88790 -13.36201 -13.20386 -12.71936 -12.53917 -12.46543 -12.20768 -11.95208 -11.68349 -11.42888 -10.96573 -10.68398 -10.60592 -9.64014 -9.26787 -8.34561 -8.23458 -6.33180 0.10626 0.27546 0.58601 1.29291 1.47375 1.53079 1.61281 1.70032 2.51266 2.58114 3.12002 3.88002 3.98942 4.09871 4.25564 4.31805 4.32391 4.42686 4.58760 4.78562 4.84630 4.94808 5.19217 5.30890 5.41136 5.57226 5.78399 6.13135 6.44740 6.75991 6.96002 7.39633 8.89616 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.011026 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.864070 B = 2538.741789 C = 3580.549097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.153 6.153 3 C -0.087 4.087 4 C -0.129 4.129 5 C -0.093 4.093 6 C -0.121 4.121 7 C -0.035 4.035 8 Cl -0.064 7.064 9 C -0.083 4.083 10 C 0.224 3.776 11 H 0.050 0.950 12 N -0.853 5.853 13 C -0.495 4.495 14 H 0.032 0.968 15 C 0.033 3.967 16 N -0.943 5.943 17 Si 0.980 3.020 18 H -0.278 1.278 19 H -0.261 1.261 20 H -0.319 1.319 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.123 0.877 24 H 0.158 0.842 25 H 0.174 0.826 26 H 0.154 0.846 27 H 0.345 0.655 28 H 0.327 0.673 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 6.410 8.834 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.089 5.911 3 C -0.201 4.201 4 C -0.153 4.153 5 C -0.112 4.112 6 C -0.142 4.142 7 C -0.063 4.063 8 Cl -0.035 7.035 9 C -0.091 4.091 10 C 0.114 3.886 11 H 0.068 0.932 12 N -0.391 5.391 13 C -0.534 4.534 14 H 0.050 0.950 15 C -0.167 4.167 16 N -0.582 5.582 17 Si 0.810 3.190 18 H -0.204 1.204 19 H -0.186 1.186 20 H -0.249 1.249 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.141 0.859 24 H 0.176 0.824 25 H 0.192 0.808 26 H 0.171 0.829 27 H 0.166 0.834 28 H 0.139 0.861 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.863 4.590 8.619 16.957 hybrid contribution -0.186 1.398 0.063 1.412 sum -14.048 5.988 8.682 17.567 Atomic orbital electron populations 1.23845 0.91982 1.08416 1.06588 1.86224 1.09374 1.03288 1.92202 1.21711 0.95315 0.97677 1.05360 1.21588 0.98846 0.93062 1.01763 1.21352 0.95845 0.95807 0.98217 1.21368 0.91947 0.99643 1.01262 1.20906 0.85873 0.93533 1.06007 1.98296 1.18896 1.89621 1.96731 1.20592 0.95077 0.94713 0.98763 1.18391 0.86908 0.92496 0.90810 0.93230 1.59319 1.25601 1.48627 1.05575 1.20752 1.15813 1.20584 0.96215 0.94966 1.25655 0.95851 0.98131 0.97024 1.70053 1.24077 1.39697 1.24420 0.85140 0.78989 0.76158 0.78691 1.20398 1.18570 1.24909 0.88197 0.88845 0.85868 0.82429 0.80826 0.82865 0.83433 0.86058 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.15 113.37 1.04 -1.61 15 2 S -0.15 -5.10 20.53 -56.49 -1.16 -6.26 15 3 C -0.09 -3.05 6.11 22.62 0.14 -2.91 15 4 C -0.13 -3.32 9.36 22.41 0.21 -3.11 15 5 C -0.09 -2.12 10.04 22.25 0.22 -1.90 15 6 C -0.12 -3.40 9.83 22.33 0.22 -3.18 15 7 C -0.03 -1.28 6.14 22.30 0.14 -1.15 15 8 Cl -0.06 -2.47 24.19 -2.72 -0.07 -2.54 15 9 C -0.08 -3.44 4.76 -19.70 -0.09 -3.53 15 10 C 0.22 10.82 2.09 43.42 0.09 10.91 15 11 H 0.05 2.53 5.21 -2.39 -0.01 2.52 15 12 N -0.85 -38.29 6.51 -174.95 -1.14 -39.43 15 13 C -0.50 -28.77 8.22 25.60 0.21 -28.55 15 14 H 0.03 2.09 7.98 -2.91 -0.02 2.07 15 15 C 0.03 1.96 5.47 84.66 0.46 2.43 15 16 N -0.94 -60.44 13.96 21.45 0.30 -60.14 15 17 Si 0.98 51.18 26.02 68.60 1.78 52.96 15 18 H -0.28 -14.25 7.11 99.48 0.71 -13.55 15 19 H -0.26 -13.23 6.55 99.48 0.65 -12.58 15 20 H -0.32 -16.62 7.11 99.48 0.71 -15.91 15 21 H 0.10 1.48 7.75 -2.39 -0.02 1.46 15 22 H 0.09 1.56 7.75 -2.39 -0.02 1.54 15 23 H 0.12 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.16 2.88 5.88 -2.91 -0.02 2.86 15 25 H 0.17 2.37 8.06 -2.91 -0.02 2.35 15 26 H 0.15 3.44 8.06 -2.91 -0.02 3.42 15 27 H 0.34 15.52 5.26 -89.70 -0.47 15.05 15 28 H 0.33 12.73 8.89 -89.70 -0.80 11.93 15 29 H 0.26 16.00 8.31 -92.71 -0.77 15.23 15 Total: -1.00 -71.98 264.41 2.23 -69.75 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.13 Total: 18.25 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 2.64 Total: -32.60 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -0.84 Total: -99.57 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 1.78 Total: 52.96 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.16 Total: -6.26 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.07 Total: -2.54 kcal Total: -71.98 2.23 -69.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545707.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.357 kcal (2) G-P(sol) polarization free energy of solvation -71.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds