Wall clock time and date at job start Mon Mar 30 2020 06:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76201 * 102.99578 * 2 1 4 4 C 1.39001 * 120.07597 * 0.20262 * 3 2 1 5 5 C 1.38064 * 119.94380 * 180.23044 * 4 3 2 6 6 C 1.38303 * 120.09862 * 359.82274 * 5 4 3 7 7 C 1.38408 * 120.14282 * 359.97080 * 6 5 4 8 8 Cl 1.73602 * 119.97193 * 180.02562 * 7 6 5 9 9 C 1.38212 * 120.05365 * 359.97438 * 7 6 5 10 10 C 1.50701 * 120.04765 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47244 * 191.24655 * 10 9 7 12 12 N 1.46902 * 109.46847 * 311.24597 * 10 9 7 13 13 C 1.50702 * 109.47298 * 71.24514 * 10 9 7 14 14 H 1.08002 * 119.99614 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00207 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99896 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00157 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47127 * 89.99835 * 17 15 13 19 19 H 1.48493 * 109.47226 * 210.00226 * 17 15 13 20 20 H 1.48506 * 109.47152 * 330.00216 * 17 15 13 21 21 H 1.09000 * 109.47358 * 60.00483 * 1 2 3 22 22 H 1.09003 * 109.46906 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47470 * 300.00252 * 1 2 3 24 24 H 1.08003 * 120.02804 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.95440 * 179.78994 * 5 4 3 26 26 H 1.07998 * 119.93338 * 179.97438 * 6 5 4 27 27 H 1.00898 * 110.99968 * 75.99003 * 12 10 9 28 28 H 1.00907 * 110.99929 * 199.93615 * 12 10 9 29 29 H 0.97001 * 119.99790 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1948 2.6661 0.0043 5 6 1.5084 4.0107 -0.0006 6 6 2.8312 4.4144 -0.0059 7 6 3.8453 3.4725 -0.0059 8 17 5.5042 3.9841 -0.0119 9 6 3.5384 2.1249 0.0001 10 6 4.6427 1.0994 -0.0004 11 1 4.2223 0.1129 -0.1957 12 7 5.6189 1.4317 -1.0467 13 6 5.3267 1.0971 1.3424 14 1 4.9947 1.7706 2.1187 15 6 6.3764 0.2353 1.5799 16 7 6.7810 -0.5844 0.6344 17 14 7.2248 0.2329 3.2441 18 1 6.5496 -0.7377 4.1425 19 1 8.6475 -0.1569 3.0739 20 1 7.1515 1.5916 3.8390 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.1615 2.3522 0.0080 25 1 0.7196 4.7484 -0.0007 26 1 3.0734 5.4668 -0.0101 27 1 6.2054 2.2020 -0.7625 28 1 6.1743 0.6258 -1.2921 29 1 7.5193 -1.1910 0.8017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260545711.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:25 Heat of formation + Delta-G solvation = -1.901418 kcal Electronic energy + Delta-G solvation = -14983.669086 eV Core-core repulsion = 12443.760369 eV Total energy + Delta-G solvation = -2539.908717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24054 -37.22762 -36.49107 -33.52327 -31.99390 -31.03193 -29.52766 -27.83561 -24.72537 -23.76427 -21.81315 -18.64673 -18.59222 -17.14453 -16.87024 -16.44709 -15.72676 -15.48167 -15.05917 -14.96078 -14.53543 -14.20638 -13.97161 -13.51509 -13.13246 -13.06629 -12.88903 -12.55983 -12.34934 -12.31462 -11.90117 -11.81987 -11.35521 -10.86090 -10.55956 -10.38913 -9.46998 -9.14405 -8.29417 -8.07346 -6.28729 0.22058 0.44576 0.67795 1.35590 1.37146 1.46671 1.47540 1.69912 2.37759 2.72877 3.12098 4.00705 4.06575 4.23689 4.34802 4.35389 4.51133 4.69805 4.80276 4.88112 5.00154 5.12284 5.37941 5.40965 5.66221 5.72735 5.90764 6.11464 6.70559 6.94651 7.19187 7.42274 8.87943 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.010041 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.059354 B = 2787.856407 C = 3706.303968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.154 6.154 3 C -0.096 4.096 4 C -0.131 4.131 5 C -0.099 4.099 6 C -0.124 4.124 7 C -0.027 4.027 8 Cl -0.065 7.065 9 C -0.042 4.042 10 C 0.245 3.755 11 H 0.029 0.971 12 N -0.846 5.846 13 C -0.533 4.533 14 H 0.041 0.959 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.948 3.052 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.272 1.272 21 H 0.095 0.905 22 H 0.121 0.879 23 H 0.093 0.907 24 H 0.156 0.844 25 H 0.173 0.827 26 H 0.153 0.847 27 H 0.329 0.671 28 H 0.331 0.669 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.356 7.157 -1.083 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.089 5.911 3 C -0.209 4.209 4 C -0.155 4.155 5 C -0.119 4.119 6 C -0.145 4.145 7 C -0.056 4.056 8 Cl -0.036 7.036 9 C -0.048 4.048 10 C 0.134 3.866 11 H 0.047 0.953 12 N -0.379 5.379 13 C -0.573 4.573 14 H 0.059 0.941 15 C -0.176 4.176 16 N -0.556 5.556 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.197 1.197 21 H 0.114 0.886 22 H 0.140 0.860 23 H 0.112 0.888 24 H 0.173 0.827 25 H 0.191 0.809 26 H 0.171 0.829 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.072 6.158 -1.582 13.644 hybrid contribution 1.077 0.429 1.550 1.935 sum -10.996 6.588 -0.032 12.818 Atomic orbital electron populations 1.23830 0.92569 1.08194 1.06425 1.86310 1.08695 1.03696 1.92447 1.21703 0.95443 0.97487 1.06309 1.21522 0.98613 0.93107 1.02268 1.21289 0.95838 0.95671 0.99079 1.21357 0.91948 0.99559 1.01674 1.20823 0.85743 0.93473 1.05532 1.98264 1.19134 1.89468 1.96723 1.20055 0.94119 0.94321 0.96331 1.17769 0.88208 0.90941 0.89665 0.95298 1.59765 1.22888 1.12145 1.43116 1.21728 1.15979 1.20364 0.99238 0.94104 1.25594 0.97488 0.94567 0.99905 1.69912 1.28202 1.23340 1.34098 0.85701 0.77825 0.78364 0.80696 1.20202 1.20628 1.19683 0.88565 0.86038 0.88766 0.82661 0.80942 0.82922 0.85401 0.85658 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.15 113.37 1.04 -2.03 15 2 S -0.15 -5.65 20.53 -56.49 -1.16 -6.81 15 3 C -0.10 -3.72 6.11 22.62 0.14 -3.58 15 4 C -0.13 -3.78 9.36 22.41 0.21 -3.57 15 5 C -0.10 -2.53 10.04 22.24 0.22 -2.31 15 6 C -0.12 -3.82 9.83 22.33 0.22 -3.60 15 7 C -0.03 -1.09 6.14 22.30 0.14 -0.96 15 8 Cl -0.06 -2.63 24.20 -2.72 -0.07 -2.70 15 9 C -0.04 -1.90 4.91 -19.70 -0.10 -1.99 15 10 C 0.24 12.83 2.60 43.42 0.11 12.95 15 11 H 0.03 1.68 6.14 -2.39 -0.01 1.66 15 12 N -0.85 -43.55 8.66 -174.94 -1.51 -45.07 15 13 C -0.53 -29.78 7.62 25.60 0.20 -29.59 15 14 H 0.04 2.34 7.74 -2.91 -0.02 2.32 15 15 C 0.02 1.36 5.39 84.65 0.46 1.81 15 16 N -0.92 -52.45 11.85 21.45 0.25 -52.20 15 17 Si 0.95 44.57 29.54 68.60 2.03 46.60 15 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 15 21 H 0.10 1.74 7.76 -2.39 -0.02 1.72 15 22 H 0.12 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.09 1.76 7.74 -2.39 -0.02 1.74 15 24 H 0.16 3.28 5.88 -2.91 -0.02 3.26 15 25 H 0.17 2.74 8.06 -2.91 -0.02 2.72 15 26 H 0.15 3.74 8.06 -2.91 -0.02 3.72 15 27 H 0.33 16.51 5.31 -89.70 -0.48 16.04 15 28 H 0.33 18.08 7.66 -89.69 -0.69 17.39 15 29 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 Total: -1.00 -64.96 268.02 2.20 -62.75 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.03 Total: 30.29 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 2.63 Total: -32.87 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -1.26 Total: -97.27 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -1.16 Total: -6.81 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.07 Total: -2.70 kcal Total: -64.96 2.20 -62.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545711.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.853 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds