Wall clock time and date at job start Mon Mar 30 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34369 * 125.31408 * 2 1 4 4 Br 1.89104 * 126.76119 * 359.97229 * 3 2 1 5 5 C 1.47011 * 106.47916 * 179.97438 * 3 2 1 6 6 C 1.41334 * 127.10929 * 180.02562 * 5 3 2 7 7 H 1.08002 * 120.00084 * 145.71457 * 6 5 3 8 8 C 1.39685 * 120.00187 * 325.71705 * 6 5 3 9 9 N 1.31056 * 119.99505 * 338.92067 * 8 6 5 10 10 Si 1.86800 * 120.00186 * 158.91029 * 8 6 5 11 11 H 1.48497 * 109.47045 * 60.00692 * 10 8 6 12 12 H 1.48503 * 109.47028 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47143 * 300.00148 * 10 8 6 14 14 C 1.39275 * 105.78867 * 359.97438 * 5 3 2 15 15 C 1.50695 * 126.02761 * 180.26770 * 14 5 3 16 16 N 1.34902 * 107.94323 * 359.97438 * 14 5 3 17 17 C 1.46495 * 124.79060 * 179.97438 * 16 14 5 18 18 H 1.08993 * 109.46960 * 270.02811 * 1 2 3 19 19 H 1.09001 * 109.47022 * 30.02821 * 1 2 3 20 20 H 1.08994 * 109.46779 * 150.02775 * 1 2 3 21 21 H 0.97000 * 119.99617 * 180.02562 * 9 8 6 22 22 H 1.08999 * 109.46885 * 269.68704 * 15 14 5 23 23 H 1.09005 * 109.47402 * 29.68373 * 15 14 5 24 24 H 1.09004 * 109.47254 * 149.68666 * 15 14 5 25 25 H 1.08994 * 109.47350 * 90.00355 * 17 16 14 26 26 H 1.09003 * 109.47106 * 210.00644 * 17 16 14 27 27 H 1.09005 * 109.47315 * 329.99959 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2838 1.0964 0.0000 4 35 1.7018 2.8957 -0.0007 5 6 3.6752 0.6218 0.0006 6 6 4.8461 1.4133 0.0014 7 1 5.7260 1.0754 0.5286 8 6 4.8654 2.6326 -0.6798 9 7 3.9986 2.8631 -1.6354 10 14 6.1263 3.9348 -0.2285 11 1 7.4934 3.3905 -0.4288 12 1 5.9367 5.1279 -1.0922 13 1 5.9510 4.3216 1.1945 14 6 3.6011 -0.7690 0.0016 15 6 4.7710 -1.7188 0.0082 16 7 2.2975 -1.1158 0.0021 17 6 1.7990 -2.4933 0.0026 18 1 -0.3633 0.0005 1.0276 19 1 -0.3633 0.8897 -0.5143 20 1 -0.3633 -0.8902 -0.5134 21 1 4.0122 3.7097 -2.1087 22 1 5.0545 -1.9531 -1.0179 23 1 5.6134 -1.2543 0.5208 24 1 4.4914 -2.6361 0.5264 25 1 1.6756 -2.8347 1.0303 26 1 0.8383 -2.5322 -0.5110 27 1 2.5120 -3.1380 -0.5114 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928849.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:53 Heat of formation + Delta-G solvation = 19.783689 kcal Electronic energy + Delta-G solvation = -12293.284646 eV Core-core repulsion = 10097.135709 eV Total energy + Delta-G solvation = -2196.148937 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 257.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.26191 -35.40110 -33.49153 -32.80011 -30.54852 -29.68011 -28.52330 -25.48462 -24.10847 -21.01986 -19.13673 -18.18681 -16.59244 -16.33691 -16.05723 -14.76111 -14.36907 -14.04758 -13.85867 -13.74544 -13.15542 -13.00126 -12.97883 -12.80417 -12.72625 -12.40918 -12.25955 -11.76338 -11.68148 -11.20967 -10.75490 -9.98166 -8.62024 -8.30316 -8.14254 -5.83182 1.39003 1.45429 1.52543 1.64165 1.75484 2.32812 2.45514 2.78968 3.51595 4.24630 4.26145 4.46770 4.56381 4.67374 4.71584 4.74879 4.86909 5.01275 5.12868 5.27006 5.48805 5.62668 5.82020 6.15225 6.59102 6.91419 7.05643 7.36785 7.38811 8.76655 Molecular weight = 257.01amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.013741 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.231009 B = 2037.249733 C = 3080.044341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.018 3.982 3 C -0.206 4.206 4 Br -0.061 7.061 5 C 0.037 3.963 6 C -0.503 4.503 7 H 0.057 0.943 8 C 0.053 3.947 9 N -0.817 5.817 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.276 1.276 13 H -0.272 1.272 14 C -0.147 4.147 15 C -0.033 4.033 16 N -0.442 5.442 17 C 0.075 3.925 18 H 0.076 0.924 19 H 0.068 0.932 20 H 0.081 0.919 21 H 0.272 0.728 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 -5.373 2.311 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.097 4.097 3 C -0.295 4.295 4 Br 0.023 6.977 5 C 0.030 3.970 6 C -0.536 4.536 7 H 0.075 0.925 8 C -0.161 4.161 9 N -0.444 5.444 10 Si 0.766 3.234 11 H -0.191 1.191 12 H -0.201 1.201 13 H -0.197 1.197 14 C -0.255 4.255 15 C -0.091 4.091 16 N -0.121 5.121 17 C -0.066 4.066 18 H 0.095 0.905 19 H 0.086 0.914 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.787 -4.931 2.128 8.655 hybrid contribution 0.878 0.567 0.050 1.046 sum -5.909 -4.364 2.178 7.662 Atomic orbital electron populations 1.20277 0.86553 1.03198 1.02742 1.20039 0.93815 0.85188 1.10705 1.22011 0.96106 0.87933 1.23418 1.96068 1.87663 1.16030 1.97941 1.18335 0.91193 0.90182 0.97310 1.18500 0.98011 1.04579 1.32521 0.92485 1.25954 0.97334 0.99460 0.93389 1.70073 1.34005 1.23962 1.16374 0.85874 0.79894 0.78749 0.78913 1.19086 1.20092 1.19727 1.20778 0.84802 0.94331 1.25614 1.19698 0.93375 0.95646 1.00369 1.42993 1.04579 1.05487 1.59056 1.22038 1.01377 0.79929 1.03280 0.90535 0.91359 0.90010 0.91805 0.93511 0.92802 0.91543 0.90715 0.88950 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 9.84 71.24 0.70 -1.56 15 2 C 0.02 0.79 6.84 40.91 0.28 1.07 15 3 C -0.21 -10.63 6.33 23.69 0.15 -10.48 15 4 Br -0.06 -2.94 30.20 -20.37 -0.62 -3.55 15 5 C 0.04 2.06 5.68 -19.97 -0.11 1.94 15 6 C -0.50 -28.98 8.97 23.38 0.21 -28.77 15 7 H 0.06 3.25 7.70 -2.91 -0.02 3.23 15 8 C 0.05 2.90 4.68 85.16 0.40 3.30 15 9 N -0.82 -45.96 10.46 21.79 0.23 -45.74 15 10 Si 0.94 42.97 29.61 68.60 2.03 45.00 15 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 15 14 C -0.15 -7.02 6.99 42.34 0.30 -6.72 15 15 C -0.03 -1.30 9.64 71.23 0.69 -0.61 15 16 N -0.44 -18.07 3.10 -516.02 -1.60 -19.66 15 17 C 0.07 2.02 10.40 127.77 1.33 3.35 15 18 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 19 H 0.07 2.27 7.71 -2.39 -0.02 2.25 15 20 H 0.08 2.10 6.92 -2.39 -0.02 2.09 15 21 H 0.27 14.45 8.30 -92.71 -0.77 13.68 15 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.05 2.18 7.76 -2.38 -0.02 2.16 15 24 H 0.07 2.08 7.61 -2.39 -0.02 2.06 15 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.09 2.05 6.88 -2.39 -0.02 2.03 15 27 H 0.08 2.06 7.52 -2.38 -0.02 2.04 15 Total: -1.00 -66.48 248.89 5.15 -61.34 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.16 Total: 1.10 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 3.94 Total: -38.48 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -1.37 Total: -65.40 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 35 Polarization: -2.94 SS G_CDS: -0.62 Total: -3.55 kcal Total: -66.48 5.15 -61.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928849.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.121 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds