Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36434 * 125.89815 * 2 1 4 4 H 0.97002 * 125.63772 * 0.02562 * 3 2 1 5 5 C 1.36334 * 108.72478 * 180.02562 * 3 2 1 6 6 C 1.50693 * 125.87972 * 179.97438 * 5 3 2 7 7 C 1.34852 * 108.23634 * 359.97438 * 5 3 2 8 8 C 1.50700 * 126.28376 * 180.02562 * 7 5 3 9 9 C 1.50703 * 109.46979 * 269.99563 * 8 7 5 10 10 H 1.07999 * 119.99870 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00124 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00086 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47375 * 59.99564 * 13 11 9 15 15 H 1.48503 * 109.46830 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46901 * 299.99580 * 13 11 9 17 17 C 1.34892 * 125.90006 * 179.97438 * 2 1 3 18 18 Br 1.89104 * 126.30030 * 0.26685 * 17 2 1 19 19 H 1.08999 * 109.46979 * 269.99629 * 1 2 3 20 20 H 1.08990 * 109.47338 * 30.00054 * 1 2 3 21 21 H 1.08997 * 109.46958 * 150.00342 * 1 2 3 22 22 H 1.09001 * 109.47052 * 270.01817 * 6 5 3 23 23 H 1.08998 * 109.47611 * 30.01983 * 6 5 3 24 24 H 1.09001 * 109.47347 * 150.02635 * 6 5 3 25 25 H 1.08996 * 109.47223 * 29.99493 * 8 7 5 26 26 H 1.08998 * 109.47144 * 150.00077 * 8 7 5 27 27 H 0.96992 * 120.00534 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3070 1.1052 0.0000 4 1 1.9998 2.0253 0.0004 5 6 3.6096 0.7027 -0.0006 6 6 4.8139 1.6084 -0.0013 7 6 3.6346 -0.6456 -0.0004 8 6 4.8657 -1.5148 -0.0003 9 6 5.2760 -1.8048 -1.4211 10 1 4.7028 -1.3998 -2.2420 11 6 6.3830 -2.5870 -1.6730 12 7 7.0807 -3.0806 -0.6735 13 14 6.8919 -2.9459 -3.4343 14 1 7.1875 -1.6699 -4.1339 15 1 8.1050 -3.8025 -3.4342 16 1 5.7880 -3.6503 -4.1347 17 6 2.2980 -1.0927 0.0005 18 35 1.7200 -2.8932 -0.0058 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8899 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 5.1036 1.8269 -1.0292 23 1 4.5698 2.5380 0.5128 24 1 5.6397 1.1155 0.5118 25 1 5.6759 -0.9972 0.5133 26 1 4.6493 -2.4513 0.5137 27 1 7.8597 -3.6306 -0.8506 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983187.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = 24.966181 kcal Electronic energy + Delta-G solvation = -11954.148987 eV Core-core repulsion = 9758.224780 eV Total energy + Delta-G solvation = -2195.924208 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 257.011 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.68661 -33.50407 -32.27455 -31.47587 -29.22871 -28.77285 -27.14653 -23.74148 -22.34116 -19.41232 -18.19906 -16.24898 -16.08487 -14.44784 -14.37459 -13.42480 -12.99024 -12.88193 -12.37248 -12.06961 -12.01996 -11.75866 -11.56064 -11.27929 -10.89368 -10.58865 -10.23747 -10.21049 -9.62855 -9.33217 -9.15021 -8.24271 -7.67115 -7.10403 -5.86134 -3.87324 2.60566 2.66013 3.41371 3.44932 3.46654 3.60412 3.84603 4.59026 5.25169 5.38495 5.48251 5.64864 5.69832 5.75148 6.01711 6.16552 6.26124 6.55526 6.62370 6.93506 7.48046 7.57104 7.79597 7.98971 8.09755 8.17548 8.55951 9.16472 9.74446 11.23668 Molecular weight = 257.01amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.009961 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.097991 B = 2810.179087 C = 3614.493805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.027 3.973 3 N -0.555 5.555 4 H 0.406 0.594 5 C -0.008 4.008 6 C -0.069 4.069 7 C -0.082 4.082 8 C 0.079 3.921 9 C -0.495 4.495 10 H 0.052 0.948 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.151 4.151 18 Br -0.047 7.047 19 H 0.068 0.932 20 H 0.060 0.940 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.024 0.976 26 H 0.031 0.969 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 6.684 2.532 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 N -0.152 5.152 4 H 0.242 0.758 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.089 4.089 8 C 0.041 3.959 9 C -0.534 4.534 10 H 0.070 0.930 11 C -0.142 4.142 12 N -0.537 5.537 13 Si 0.716 3.284 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.239 4.239 18 Br 0.037 6.963 19 H 0.087 0.913 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.084 6.057 2.567 13.758 hybrid contribution 0.300 0.558 -1.059 1.234 sum -11.784 6.615 1.509 13.598 Atomic orbital electron populations 1.20281 0.88282 1.02989 1.02317 1.19859 0.92719 0.85689 1.10571 1.41673 1.05824 1.07106 1.60646 0.75754 1.20060 0.84013 0.94427 1.13255 1.20150 0.94098 0.96160 1.02301 1.20018 0.94864 0.92258 1.01723 1.17767 0.87598 0.93218 0.97277 1.20990 1.10363 1.30256 0.91743 0.92984 1.24946 0.96601 0.96058 0.96645 1.69941 1.18431 1.34941 1.30429 0.86716 0.77853 0.78175 0.85620 1.20453 1.21413 1.20275 1.20810 0.95409 0.88923 1.18731 1.96421 1.89025 1.12667 1.98209 0.91296 0.92128 0.90099 0.91485 0.93333 0.89756 0.95833 0.95058 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.22 36.01 0.37 -0.64 15 2 C 0.03 0.46 7.17 -81.73 -0.59 -0.12 15 3 N -0.55 -8.78 6.08 -5.41 -0.03 -8.81 15 4 H 0.41 4.75 8.96 -40.82 -0.37 4.38 15 5 C -0.01 -0.15 7.16 -81.80 -0.59 -0.74 15 6 C -0.07 -1.14 10.21 36.00 0.37 -0.78 15 7 C -0.08 -1.87 5.33 -104.80 -0.56 -2.43 15 8 C 0.08 2.11 5.11 -29.03 -0.15 1.96 15 9 C -0.49 -14.24 9.09 -34.44 -0.31 -14.55 15 10 H 0.05 1.51 7.74 -52.49 -0.41 1.11 15 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 12 N -0.90 -27.12 13.29 55.43 0.74 -26.38 15 13 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 15 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 17 C -0.15 -3.14 6.56 -39.75 -0.26 -3.40 15 18 Br -0.05 -0.92 33.14 -68.01 -2.25 -3.18 15 19 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 1.02 7.74 -51.93 -0.40 0.62 15 22 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.08 1.50 7.13 -51.93 -0.37 1.13 15 25 H 0.02 0.65 7.13 -51.93 -0.37 0.28 15 26 H 0.03 0.90 7.97 -51.93 -0.41 0.49 15 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 257.23 15.07 3.88 3.88 Total: -1.00 -31.89 257.23 -7.66 -39.56 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -3.15 Total: -3.10 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.81 Total: -19.13 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.70 Total: -35.20 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -2.25 Total: -3.18 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.89 -7.66 -39.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983187.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.521 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds