Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36434 * 125.89815 * 2 1 4 4 H 0.97002 * 125.63772 * 0.02562 * 3 2 1 5 5 C 1.36334 * 108.72478 * 180.02562 * 3 2 1 6 6 C 1.50693 * 125.87972 * 179.97438 * 5 3 2 7 7 C 1.34852 * 108.23634 * 359.97438 * 5 3 2 8 8 C 1.50700 * 126.28376 * 180.02562 * 7 5 3 9 9 C 1.50703 * 109.46979 * 269.99563 * 8 7 5 10 10 H 1.07999 * 119.99870 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00124 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00086 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47375 * 59.99564 * 13 11 9 15 15 H 1.48503 * 109.46830 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46901 * 299.99580 * 13 11 9 17 17 C 1.34892 * 125.90006 * 179.97438 * 2 1 3 18 18 Br 1.89104 * 126.30030 * 0.26685 * 17 2 1 19 19 H 1.08999 * 109.46979 * 269.99629 * 1 2 3 20 20 H 1.08990 * 109.47338 * 30.00054 * 1 2 3 21 21 H 1.08997 * 109.46958 * 150.00342 * 1 2 3 22 22 H 1.09001 * 109.47052 * 270.01817 * 6 5 3 23 23 H 1.08998 * 109.47611 * 30.01983 * 6 5 3 24 24 H 1.09001 * 109.47347 * 150.02635 * 6 5 3 25 25 H 1.08996 * 109.47223 * 29.99493 * 8 7 5 26 26 H 1.08998 * 109.47144 * 150.00077 * 8 7 5 27 27 H 0.96992 * 120.00534 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3070 1.1052 0.0000 4 1 1.9998 2.0253 0.0004 5 6 3.6096 0.7027 -0.0006 6 6 4.8139 1.6084 -0.0013 7 6 3.6346 -0.6456 -0.0004 8 6 4.8657 -1.5148 -0.0003 9 6 5.2760 -1.8048 -1.4211 10 1 4.7028 -1.3998 -2.2420 11 6 6.3830 -2.5870 -1.6730 12 7 7.0807 -3.0806 -0.6735 13 14 6.8919 -2.9459 -3.4343 14 1 7.1875 -1.6699 -4.1339 15 1 8.1050 -3.8025 -3.4342 16 1 5.7880 -3.6503 -4.1347 17 6 2.2980 -1.0927 0.0005 18 35 1.7200 -2.8932 -0.0058 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8899 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 5.1036 1.8269 -1.0292 23 1 4.5698 2.5380 0.5128 24 1 5.6397 1.1155 0.5118 25 1 5.6759 -0.9972 0.5133 26 1 4.6493 -2.4513 0.5137 27 1 7.8597 -3.6306 -0.8506 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983187.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = 5.142158 kcal Electronic energy + Delta-G solvation = -11955.008621 eV Core-core repulsion = 9758.224780 eV Total energy + Delta-G solvation = -2196.783842 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 257.011 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.12898 -35.50791 -33.69975 -33.23502 -30.80503 -29.97493 -29.01298 -25.53394 -24.02600 -20.83022 -19.81601 -18.36076 -17.56899 -16.43921 -15.82953 -14.86851 -14.35410 -14.31612 -13.99579 -13.81975 -13.39809 -13.22012 -12.97741 -12.84708 -12.68529 -12.49449 -12.10628 -11.75893 -11.58642 -11.44939 -10.75151 -10.48838 -9.23881 -8.61117 -8.06275 -6.18231 1.15925 1.24787 1.40645 1.44117 1.51377 1.94494 2.48871 2.53565 3.22125 4.06033 4.27142 4.35497 4.55866 4.73004 4.79503 4.84644 5.03378 5.12249 5.20746 5.37883 5.47680 5.74994 5.86403 5.96522 6.28241 6.36818 6.86470 6.93367 7.48059 9.00936 Molecular weight = 257.01amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.009961 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.097991 B = 2810.179087 C = 3614.493805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.534 5.534 4 H 0.431 0.569 5 C -0.001 4.001 6 C -0.067 4.067 7 C -0.136 4.136 8 C 0.095 3.905 9 C -0.506 4.506 10 H 0.044 0.956 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.954 3.046 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.274 1.274 17 C -0.193 4.193 18 Br -0.052 7.052 19 H 0.089 0.911 20 H 0.093 0.907 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.061 0.939 25 H -0.001 1.001 26 H -0.004 1.004 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 8.541 1.618 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 N -0.133 5.133 4 H 0.272 0.728 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.142 4.142 8 C 0.058 3.942 9 C -0.544 4.544 10 H 0.062 0.938 11 C -0.191 4.191 12 N -0.573 5.573 13 Si 0.779 3.221 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.199 1.199 17 C -0.279 4.279 18 Br 0.032 6.968 19 H 0.107 0.893 20 H 0.112 0.888 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.110 0.890 24 H 0.080 0.920 25 H 0.018 0.982 26 H 0.015 0.985 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.626 7.953 1.654 15.864 hybrid contribution 0.724 0.023 -0.722 1.022 sum -12.903 7.976 0.932 15.197 Atomic orbital electron populations 1.20452 0.84624 1.04547 1.04104 1.20454 0.94656 0.84597 1.06726 1.41596 1.04409 1.08307 1.58978 0.72787 1.20218 0.86031 0.93608 1.11413 1.20177 0.92396 0.97253 1.02678 1.19786 0.94405 0.93800 1.06243 1.17363 0.89010 0.92239 0.95623 1.21226 1.10400 1.30230 0.92523 0.93752 1.25792 0.96577 0.95784 1.00983 1.70071 1.18921 1.35597 1.32711 0.85668 0.77569 0.78460 0.80380 1.19152 1.20682 1.19906 1.21005 0.95316 0.89989 1.21601 1.96371 1.88698 1.13405 1.98330 0.89254 0.88809 0.90306 0.91330 0.89041 0.91993 0.98237 0.98531 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.22 71.24 0.73 -0.95 15 2 C 0.05 1.66 7.17 41.08 0.29 1.95 15 3 N -0.53 -15.19 6.08 -171.03 -1.04 -16.23 15 4 H 0.43 8.08 8.96 -92.71 -0.83 7.25 15 5 C 0.00 -0.05 7.16 41.08 0.29 0.24 15 6 C -0.07 -2.13 10.21 71.23 0.73 -1.40 15 7 C -0.14 -6.29 5.33 -19.98 -0.11 -6.39 15 8 C 0.10 5.33 5.11 29.10 0.15 5.48 15 9 C -0.51 -29.88 9.09 25.60 0.23 -29.65 15 10 H 0.04 2.63 7.74 -2.91 -0.02 2.61 15 11 C 0.01 0.35 5.46 84.65 0.46 0.81 15 12 N -0.93 -57.88 13.29 21.45 0.28 -57.60 15 13 Si 0.95 45.88 29.54 68.60 2.03 47.91 15 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 16 H -0.27 -12.93 7.11 99.48 0.71 -12.23 15 17 C -0.19 -7.91 6.56 22.16 0.15 -7.77 15 18 Br -0.05 -2.05 33.14 -20.37 -0.68 -2.72 15 19 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.08 1.74 7.74 -2.39 -0.02 1.73 15 22 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 24 H 0.06 2.23 7.13 -2.39 -0.02 2.21 15 25 H 0.00 -0.03 7.13 -2.39 -0.02 -0.05 15 26 H 0.00 -0.22 7.97 -2.39 -0.02 -0.24 15 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 15 Total: -1.00 -71.19 257.23 3.87 -67.32 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 0.35 Total: -1.00 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 2.93 Total: -37.67 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -0.75 Total: -73.83 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 35 Polarization: -2.05 SS G_CDS: -0.68 Total: -2.72 kcal Total: -71.19 3.87 -67.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983187.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.461 kcal (2) G-P(sol) polarization free energy of solvation -71.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds