Wall clock time and date at job start Mon Mar 30 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 119.97341 * 2 1 4 4 C 1.38401 * 119.98202 * 180.23216 * 3 2 1 5 5 F 1.35101 * 120.02985 * 179.74059 * 4 3 2 6 6 C 1.38593 * 119.94025 * 359.47132 * 4 3 2 7 7 Cl 1.73598 * 120.02132 * 180.29760 * 6 4 3 8 8 C 1.38278 * 119.95264 * 0.27319 * 6 4 3 9 9 C 1.38219 * 119.97244 * 179.72290 * 2 1 3 10 10 C 1.50697 * 119.97192 * 0.02562 * 9 2 1 11 11 H 1.08999 * 109.47264 * 354.01375 * 10 9 2 12 12 C 1.50710 * 109.46707 * 234.01703 * 10 9 2 13 13 H 1.07998 * 120.00239 * 301.64058 * 12 10 9 14 14 C 1.37878 * 119.99484 * 121.64632 * 12 10 9 15 15 N 1.31512 * 120.00412 * 353.23104 * 14 12 10 16 16 Si 1.86808 * 119.99762 * 173.23057 * 14 12 10 17 17 H 1.48495 * 109.46659 * 59.99935 * 16 14 12 18 18 H 1.48495 * 109.46911 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47087 * 300.00110 * 16 14 12 20 20 C 1.52995 * 109.47286 * 114.02019 * 10 9 2 21 21 N 1.46908 * 109.47073 * 185.12014 * 20 10 9 22 22 H 1.08999 * 109.47368 * 264.61011 * 1 2 3 23 23 H 1.09001 * 109.47299 * 24.61150 * 1 2 3 24 24 H 1.09004 * 109.47433 * 144.61510 * 1 2 3 25 25 H 1.07993 * 120.01028 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.99673 * 180.02562 * 8 6 4 27 27 H 0.97001 * 120.00032 * 179.97438 * 15 14 12 28 28 H 1.08995 * 109.47157 * 305.11505 * 20 10 9 29 29 H 1.09004 * 109.47318 * 65.11843 * 20 10 9 30 30 H 1.00900 * 111.00016 * 56.04206 * 21 20 10 31 31 H 1.00897 * 110.99532 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1975 0.0000 4 6 3.5817 1.1977 -0.0049 5 9 4.2576 2.3675 -0.0102 6 6 4.2736 -0.0031 0.0014 7 17 6.0096 -0.0052 0.0031 8 6 3.5802 -1.1994 0.0067 9 6 2.1975 -1.1973 0.0058 10 6 1.4428 -2.5017 0.0115 11 1 0.3761 -2.3038 0.1174 12 6 1.9134 -3.3492 1.1654 13 1 2.9547 -3.6249 1.2436 14 6 1.0144 -3.7727 2.1212 15 7 -0.2238 -3.3300 2.1016 16 14 1.5553 -4.9755 3.4443 17 1 2.6630 -4.3786 4.2329 18 1 0.4104 -5.2708 4.3427 19 1 2.0223 -6.2336 2.8085 20 6 1.6960 -3.2433 -1.3025 21 7 0.8658 -4.4543 -1.3492 22 1 -0.3634 -0.0965 1.0231 23 1 -0.3634 0.9343 -0.4280 24 1 -0.3634 -0.8378 -0.5951 25 1 1.6574 2.1326 0.0004 26 1 4.1186 -2.1356 0.0120 27 1 -0.8562 -3.6282 2.7738 28 1 1.4404 -2.5951 -2.1406 29 1 2.7481 -3.5213 -1.3659 30 1 -0.1101 -4.2287 -1.2274 31 1 1.0148 -4.9619 -2.2084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261090380.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:01 Heat of formation + Delta-G solvation = -40.779757 kcal Electronic energy + Delta-G solvation = -17024.115805 eV Core-core repulsion = 14052.141115 eV Total energy + Delta-G solvation = -2971.974690 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.50632 -39.07862 -36.29697 -34.97541 -32.22393 -32.03266 -30.80492 -27.48207 -26.08135 -24.25154 -22.61011 -21.11226 -19.66902 -17.00849 -16.82899 -15.87450 -15.52659 -15.32221 -14.64953 -14.21465 -13.69007 -13.46703 -13.27260 -13.03193 -12.87911 -12.40422 -12.24165 -12.04448 -11.76578 -11.09701 -10.92440 -10.85538 -10.75133 -10.64180 -10.45901 -10.28850 -9.53166 -9.03200 -8.49190 -8.32645 -7.78552 -7.59996 -6.06187 -4.03211 1.54138 1.69890 2.43389 3.34977 3.38126 3.43316 4.03457 4.45634 4.57128 5.08950 5.20962 5.47463 5.53619 5.65648 5.81897 5.99722 6.09570 6.22774 6.26946 6.35007 6.42792 6.62260 6.69182 6.77820 6.93145 7.12123 7.37711 7.68006 7.86689 8.06213 8.33241 8.35111 8.98680 9.57725 11.03528 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.007385 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.865447 B = 3790.372794 C = 4127.414962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.062 4.062 3 C -0.147 4.147 4 C 0.075 3.925 5 F -0.142 7.142 6 C -0.077 4.077 7 Cl -0.076 7.076 8 C -0.075 4.075 9 C -0.026 4.026 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.484 4.484 13 H 0.052 0.948 14 C 0.077 3.923 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.275 1.275 20 C 0.079 3.921 21 N -0.827 5.827 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.052 0.948 30 H 0.337 0.663 31 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 5.906 -5.817 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.063 4.063 3 C -0.166 4.166 4 C 0.055 3.945 5 F -0.120 7.120 6 C -0.104 4.104 7 Cl -0.047 7.047 8 C -0.094 4.094 9 C -0.027 4.027 10 C 0.034 3.966 11 H 0.110 0.890 12 C -0.521 4.521 13 H 0.070 0.930 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.201 1.201 20 C -0.052 4.052 21 N -0.355 5.355 22 H 0.100 0.900 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.018 5.705 -5.060 8.200 hybrid contribution 0.273 0.031 0.059 0.281 sum 3.291 5.736 -5.000 8.291 Atomic orbital electron populations 1.20764 0.90331 1.01563 1.03632 1.19817 0.96829 0.91544 0.98073 1.20849 0.91063 0.99338 1.05369 1.17205 0.89873 0.79831 1.07561 1.91452 1.80334 1.45855 1.94403 1.20963 0.84265 0.94312 1.10897 1.98328 1.10188 1.98949 1.97240 1.20878 0.94353 0.95627 0.98538 1.20749 0.92599 0.97208 0.92177 1.18318 0.98844 0.86710 0.92708 0.88964 1.20682 0.94585 1.30009 1.06873 0.92954 1.24812 0.94955 0.95545 0.97246 1.69821 1.03950 1.43602 1.35577 0.86676 0.77938 0.82139 0.81314 1.20532 1.21509 1.20070 1.21932 0.96734 0.89977 0.96540 1.58409 1.11348 1.25150 1.40555 0.90021 0.92801 0.90632 0.84994 0.84373 0.92905 0.99121 0.92919 0.85089 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.14 36.01 0.33 -1.43 16 2 C -0.06 -1.14 5.88 -104.63 -0.62 -1.75 16 3 C -0.15 -2.48 9.66 -39.52 -0.38 -2.86 16 4 C 0.08 1.34 7.28 -39.39 -0.29 1.05 16 5 F -0.14 -2.45 16.84 2.25 0.04 -2.41 16 6 C -0.08 -1.40 6.33 -39.44 -0.25 -1.65 16 7 Cl -0.08 -1.25 28.62 -51.86 -1.48 -2.73 16 8 C -0.08 -1.45 8.66 -39.56 -0.34 -1.80 16 9 C -0.03 -0.52 4.78 -104.62 -0.50 -1.02 16 10 C 0.05 1.16 2.15 -92.92 -0.20 0.96 16 11 H 0.09 2.15 4.50 -51.93 -0.23 1.92 16 12 C -0.48 -12.18 7.54 -34.44 -0.26 -12.44 16 13 H 0.05 1.34 7.36 -52.49 -0.39 0.96 16 14 C 0.08 1.99 5.45 -17.82 -0.10 1.90 16 15 N -0.89 -23.55 12.62 55.43 0.70 -22.85 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 C 0.08 1.56 5.97 -3.82 -0.02 1.53 16 21 N -0.83 -15.67 9.34 -10.37 -0.10 -15.77 16 22 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 23 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 24 H 0.07 1.28 6.54 -51.93 -0.34 0.94 16 25 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 26 H 0.14 2.66 7.51 -52.49 -0.39 2.26 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H -0.01 -0.17 8.14 -51.93 -0.42 -0.59 16 29 H 0.05 1.04 7.96 -51.93 -0.41 0.63 16 30 H 0.34 6.34 8.99 -39.29 -0.35 5.99 16 31 H 0.32 5.00 9.08 -39.29 -0.36 4.64 16 LS Contribution 283.76 15.07 4.28 4.28 Total: -1.00 -26.33 283.76 -7.51 -33.85 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.30 Total: 7.24 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.63 Total: -17.52 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.60 Total: -38.63 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.48 Total: -2.73 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.33 -7.51 -33.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090380.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.934 kcal (2) G-P(sol) polarization free energy of solvation -26.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds