Wall clock time and date at job start Mon Mar 30 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 119.97341 * 2 1 4 4 C 1.38401 * 119.98202 * 180.23216 * 3 2 1 5 5 F 1.35101 * 120.02985 * 179.74059 * 4 3 2 6 6 C 1.38593 * 119.94025 * 359.47132 * 4 3 2 7 7 Cl 1.73598 * 120.02132 * 180.29760 * 6 4 3 8 8 C 1.38278 * 119.95264 * 0.27319 * 6 4 3 9 9 C 1.38219 * 119.97244 * 179.72290 * 2 1 3 10 10 C 1.50697 * 119.97192 * 0.02562 * 9 2 1 11 11 H 1.08999 * 109.47264 * 354.01375 * 10 9 2 12 12 C 1.50710 * 109.46707 * 234.01703 * 10 9 2 13 13 H 1.07998 * 120.00239 * 301.64058 * 12 10 9 14 14 C 1.37878 * 119.99484 * 121.64632 * 12 10 9 15 15 N 1.31512 * 120.00412 * 353.23104 * 14 12 10 16 16 Si 1.86808 * 119.99762 * 173.23057 * 14 12 10 17 17 H 1.48495 * 109.46659 * 59.99935 * 16 14 12 18 18 H 1.48495 * 109.46911 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47087 * 300.00110 * 16 14 12 20 20 C 1.52995 * 109.47286 * 114.02019 * 10 9 2 21 21 N 1.46908 * 109.47073 * 185.12014 * 20 10 9 22 22 H 1.08999 * 109.47368 * 264.61011 * 1 2 3 23 23 H 1.09001 * 109.47299 * 24.61150 * 1 2 3 24 24 H 1.09004 * 109.47433 * 144.61510 * 1 2 3 25 25 H 1.07993 * 120.01028 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.99673 * 180.02562 * 8 6 4 27 27 H 0.97001 * 120.00032 * 179.97438 * 15 14 12 28 28 H 1.08995 * 109.47157 * 305.11505 * 20 10 9 29 29 H 1.09004 * 109.47318 * 65.11843 * 20 10 9 30 30 H 1.00900 * 111.00016 * 56.04206 * 21 20 10 31 31 H 1.00897 * 110.99532 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1975 0.0000 4 6 3.5817 1.1977 -0.0049 5 9 4.2576 2.3675 -0.0102 6 6 4.2736 -0.0031 0.0014 7 17 6.0096 -0.0052 0.0031 8 6 3.5802 -1.1994 0.0067 9 6 2.1975 -1.1973 0.0058 10 6 1.4428 -2.5017 0.0115 11 1 0.3761 -2.3038 0.1174 12 6 1.9134 -3.3492 1.1654 13 1 2.9547 -3.6249 1.2436 14 6 1.0144 -3.7727 2.1212 15 7 -0.2238 -3.3300 2.1016 16 14 1.5553 -4.9755 3.4443 17 1 2.6630 -4.3786 4.2329 18 1 0.4104 -5.2708 4.3427 19 1 2.0223 -6.2336 2.8085 20 6 1.6960 -3.2433 -1.3025 21 7 0.8658 -4.4543 -1.3492 22 1 -0.3634 -0.0965 1.0231 23 1 -0.3634 0.9343 -0.4280 24 1 -0.3634 -0.8378 -0.5951 25 1 1.6574 2.1326 0.0004 26 1 4.1186 -2.1356 0.0120 27 1 -0.8562 -3.6282 2.7738 28 1 1.4404 -2.5951 -2.1406 29 1 2.7481 -3.5213 -1.3659 30 1 -0.1101 -4.2287 -1.2274 31 1 1.0148 -4.9619 -2.2084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261090380.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:01 Heat of formation + Delta-G solvation = -55.234718 kcal Electronic energy + Delta-G solvation = -17024.742619 eV Core-core repulsion = 14052.141115 eV Total energy + Delta-G solvation = -2972.601504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.89218 -40.53791 -37.68696 -36.57399 -34.03777 -33.44214 -32.35175 -29.05014 -27.53869 -26.05168 -24.07804 -22.57298 -21.26332 -18.67786 -18.31338 -17.40939 -17.03985 -16.71526 -16.47757 -15.77181 -15.28390 -14.92806 -14.70074 -14.43365 -14.30714 -13.95001 -13.82031 -13.61765 -13.17306 -12.80917 -12.69158 -12.38019 -12.31738 -12.26397 -12.03137 -11.75209 -11.25624 -10.82499 -10.44290 -9.74584 -9.25765 -9.11413 -8.01336 -6.00992 0.10177 0.26913 1.04035 1.45937 1.48167 1.53649 2.49320 2.61505 3.16161 3.32712 3.73943 3.93763 4.14494 4.27348 4.36240 4.65837 4.71465 4.73245 4.80065 4.91141 4.98177 5.18729 5.22532 5.31612 5.40596 5.61739 5.80084 5.91516 6.03329 6.40248 6.64434 6.95206 7.07883 7.60438 9.06627 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.007385 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.865447 B = 3790.372794 C = 4127.414962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.067 4.067 3 C -0.136 4.136 4 C 0.075 3.925 5 F -0.137 7.137 6 C -0.083 4.083 7 Cl -0.062 7.062 8 C -0.083 4.083 9 C -0.048 4.048 10 C 0.055 3.945 11 H 0.078 0.922 12 C -0.488 4.488 13 H 0.039 0.961 14 C 0.037 3.963 15 N -0.910 5.910 16 Si 0.933 3.067 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.086 3.914 21 N -0.840 5.840 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.165 0.835 26 H 0.131 0.869 27 H 0.258 0.742 28 H 0.008 0.992 29 H 0.047 0.953 30 H 0.337 0.663 31 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 7.025 -6.367 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.068 4.068 3 C -0.155 4.155 4 C 0.055 3.945 5 F -0.116 7.116 6 C -0.111 4.111 7 Cl -0.034 7.034 8 C -0.102 4.102 9 C -0.049 4.049 10 C 0.036 3.964 11 H 0.096 0.904 12 C -0.526 4.526 13 H 0.057 0.943 14 C -0.163 4.163 15 N -0.550 5.550 16 Si 0.761 3.239 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.045 4.045 21 N -0.369 5.369 22 H 0.083 0.917 23 H 0.108 0.892 24 H 0.084 0.916 25 H 0.183 0.817 26 H 0.149 0.851 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.149 0.851 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.196 6.817 -5.621 9.396 hybrid contribution 0.303 -0.265 0.175 0.439 sum 3.498 6.552 -5.446 9.210 Atomic orbital electron populations 1.20726 0.89180 1.03144 1.02669 1.20020 0.97741 0.91396 0.97616 1.21126 0.90737 1.00090 1.03541 1.17337 0.90351 0.79752 1.07087 1.91468 1.80320 1.45475 1.94313 1.21007 0.85136 0.94221 1.10709 1.98330 1.08938 1.98931 1.97161 1.20795 0.94205 0.95890 0.99265 1.20655 0.93003 0.97201 0.94058 1.18199 0.98071 0.87453 0.92642 0.90424 1.20907 0.93834 1.30196 1.07698 0.94253 1.25291 0.95286 0.96876 0.98807 1.69899 1.04345 1.44580 1.36136 0.86027 0.77421 0.80677 0.79813 1.20766 1.21371 1.20414 1.21764 0.96544 0.90265 0.95941 1.58359 1.11288 1.25184 1.42080 0.91710 0.89202 0.91552 0.81706 0.85085 0.93263 0.97431 0.93409 0.85077 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.15 9.14 71.24 0.65 -2.50 16 2 C -0.07 -2.34 5.88 -19.87 -0.12 -2.46 16 3 C -0.14 -4.19 9.66 22.31 0.22 -3.98 16 4 C 0.07 2.48 7.28 22.39 0.16 2.64 16 5 F -0.14 -4.36 16.84 44.97 0.76 -3.60 16 6 C -0.08 -2.92 6.33 22.36 0.14 -2.78 16 7 Cl -0.06 -1.97 28.62 -2.72 -0.08 -2.04 16 8 C -0.08 -3.15 8.66 22.29 0.19 -2.96 16 9 C -0.05 -1.89 4.78 -19.86 -0.09 -1.99 16 10 C 0.06 2.41 2.15 -12.29 -0.03 2.38 16 11 H 0.08 3.63 4.50 -2.39 -0.01 3.62 16 12 C -0.49 -24.72 7.54 25.60 0.19 -24.53 16 13 H 0.04 2.05 7.36 -2.91 -0.02 2.02 16 14 C 0.04 1.93 5.45 84.66 0.46 2.39 16 15 N -0.91 -48.37 12.62 21.45 0.27 -48.10 16 16 Si 0.93 43.11 29.54 68.60 2.03 45.14 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 C 0.09 3.32 5.97 86.30 0.52 3.84 16 21 N -0.84 -31.25 9.34 -186.71 -1.74 -33.00 16 22 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.09 2.11 8.05 -2.39 -0.02 2.09 16 24 H 0.07 2.19 6.54 -2.39 -0.02 2.17 16 25 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 26 H 0.13 5.07 7.51 -2.91 -0.02 5.05 16 27 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 28 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 30 H 0.34 12.55 8.99 -89.69 -0.81 11.74 16 31 H 0.34 10.18 9.08 -89.70 -0.81 9.37 16 Total: -1.00 -54.58 283.76 3.09 -51.49 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.44 Total: 20.07 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 2.30 Total: -29.95 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.47 Total: -81.10 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.76 Total: -3.60 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.04 kcal Total: -54.58 3.09 -51.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090380.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.745 kcal (2) G-P(sol) polarization free energy of solvation -54.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds