Wall clock time and date at job start Mon Mar 30 2020 07:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38237 * 119.97810 * 2 1 4 4 C 1.38404 * 119.98761 * 180.25257 * 3 2 1 5 5 F 1.35100 * 120.03029 * 179.75136 * 4 3 2 6 6 C 1.38588 * 119.93726 * 359.47769 * 4 3 2 7 7 Cl 1.73606 * 120.02537 * 180.22690 * 6 4 3 8 8 C 1.38283 * 119.95292 * 0.25166 * 6 4 3 9 9 C 1.38219 * 119.97467 * 179.72995 * 2 1 3 10 10 C 1.50700 * 119.96905 * 0.04453 * 9 2 1 11 11 H 1.09000 * 109.47355 * 354.08714 * 10 9 2 12 12 C 1.50701 * 109.47275 * 114.08984 * 10 9 2 13 13 H 1.07997 * 120.00160 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99872 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99884 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99755 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47167 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47139 * 120.00073 * 16 14 12 19 19 H 1.48506 * 109.47031 * 239.99694 * 16 14 12 20 20 C 1.53003 * 109.47095 * 234.09050 * 10 9 2 21 21 N 1.46899 * 109.47309 * 64.99751 * 20 10 9 22 22 H 1.08999 * 109.46852 * 264.81319 * 1 2 3 23 23 H 1.08999 * 109.47129 * 24.80777 * 1 2 3 24 24 H 1.08996 * 109.47427 * 144.81057 * 1 2 3 25 25 H 1.08000 * 120.00772 * 359.97438 * 3 2 1 26 26 H 1.07994 * 119.99532 * 179.97438 * 8 6 4 27 27 H 0.97006 * 119.99762 * 179.97438 * 15 14 12 28 28 H 1.09001 * 109.46927 * 185.00092 * 20 10 9 29 29 H 1.09001 * 109.47305 * 304.99612 * 20 10 9 30 30 H 1.00909 * 110.99820 * 56.04311 * 21 20 10 31 31 H 1.00892 * 111.00090 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1974 0.0000 4 6 3.5817 1.1977 -0.0053 5 9 4.2576 2.3674 -0.0104 6 6 4.2736 -0.0032 0.0004 7 17 6.0096 -0.0055 -0.0003 8 6 3.5801 -1.1995 0.0060 9 6 2.1975 -1.1973 0.0056 10 6 1.4427 -2.5017 0.0108 11 1 0.3759 -2.3038 0.1151 12 6 1.6940 -3.2325 -1.2830 13 1 2.3363 -2.7964 -2.0337 14 6 1.1037 -4.4581 -1.5082 15 7 0.3219 -4.9894 -0.5939 16 14 1.4157 -5.3644 -3.1116 17 1 2.3249 -4.5594 -3.9664 18 1 2.0420 -6.6796 -2.8231 19 1 0.1276 -5.5744 -3.8202 20 6 1.9188 -3.3618 1.1832 21 7 1.5661 -2.7037 2.4483 22 1 -0.3633 -0.0929 1.0235 23 1 -0.3633 0.9328 -0.4312 24 1 -0.3634 -0.8398 -0.5922 25 1 1.6575 2.1326 -0.0004 26 1 4.1185 -2.1356 0.0100 27 1 -0.0936 -5.8515 -0.7525 28 1 1.4382 -4.3389 1.1356 29 1 3.0003 -3.4857 1.1273 30 1 0.5752 -2.5191 2.4959 31 1 1.8705 -3.2523 3.2384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261090381.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:03 Heat of formation + Delta-G solvation = -57.305287 kcal Electronic energy + Delta-G solvation = -17059.516066 eV Core-core repulsion = 14086.824775 eV Total energy + Delta-G solvation = -2972.691291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.86718 -40.54433 -37.68138 -36.65802 -34.08037 -33.43939 -32.24762 -29.18732 -27.59799 -25.79846 -24.25854 -22.54637 -21.23649 -18.59731 -18.32179 -17.53384 -17.10340 -16.68411 -16.46305 -15.87434 -15.21397 -14.98051 -14.63886 -14.45068 -14.26214 -13.87130 -13.75231 -13.59693 -13.11660 -12.93330 -12.84591 -12.44622 -12.29062 -12.03327 -11.96996 -11.64631 -11.36693 -11.15657 -10.48823 -9.70986 -9.31882 -9.15432 -8.10355 -6.24094 0.14645 0.31769 1.06368 1.39582 1.44820 1.53937 2.40930 2.66620 3.15441 3.19111 3.76125 4.01416 4.15175 4.27716 4.31187 4.65197 4.73460 4.85027 4.95248 5.00035 5.07928 5.22641 5.27168 5.33690 5.53832 5.59747 5.86480 5.96845 6.03328 6.24128 6.57164 6.74995 6.94752 7.43373 8.90572 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.007243 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.710728 B = 3865.088250 C = 4243.351340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.065 4.065 3 C -0.136 4.136 4 C 0.074 3.926 5 F -0.138 7.138 6 C -0.083 4.083 7 Cl -0.064 7.064 8 C -0.082 4.082 9 C -0.027 4.027 10 C 0.084 3.916 11 H 0.036 0.964 12 C -0.522 4.522 13 H 0.048 0.952 14 C 0.026 3.974 15 N -0.908 5.908 16 Si 0.944 3.056 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.074 3.926 21 N -0.848 5.848 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.167 0.833 26 H 0.125 0.875 27 H 0.262 0.738 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.335 0.665 31 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 8.656 2.817 9.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.065 4.065 3 C -0.154 4.154 4 C 0.054 3.946 5 F -0.116 7.116 6 C -0.110 4.110 7 Cl -0.036 7.036 8 C -0.101 4.101 9 C -0.027 4.027 10 C 0.065 3.935 11 H 0.054 0.946 12 C -0.561 4.561 13 H 0.067 0.933 14 C -0.174 4.174 15 N -0.547 5.547 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.057 4.057 21 N -0.376 5.376 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.184 0.816 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.147 0.853 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.565 9.131 2.586 9.830 hybrid contribution 0.066 -1.598 -0.655 1.728 sum 2.631 7.533 1.931 8.209 Atomic orbital electron populations 1.20820 0.89083 1.03378 1.03185 1.19967 0.97833 0.91191 0.97504 1.21113 0.90625 1.00120 1.03551 1.17338 0.90440 0.79650 1.07162 1.91464 1.80365 1.45466 1.94338 1.20968 0.85027 0.94218 1.10808 1.98326 1.09111 1.98935 1.97182 1.20711 0.94327 0.95711 0.99374 1.20196 0.92624 0.96500 0.93428 1.17820 0.94841 0.87720 0.93105 0.94568 1.21351 1.29096 1.03837 1.01819 0.93345 1.25531 0.94772 0.97970 0.99149 1.69957 1.31785 1.18329 1.34670 0.85709 0.77947 0.78540 0.80725 1.19701 1.20823 1.20600 1.21759 0.97662 0.97585 0.88649 1.58905 1.21583 1.53017 1.04143 0.89942 0.89368 0.91987 0.81583 0.85672 0.92881 0.94084 0.94702 0.85311 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 9.14 71.23 0.65 -2.49 16 2 C -0.06 -2.20 5.88 -19.87 -0.12 -2.32 16 3 C -0.14 -4.11 9.66 22.31 0.22 -3.90 16 4 C 0.07 2.47 7.28 22.39 0.16 2.63 16 5 F -0.14 -4.40 16.84 44.97 0.76 -3.65 16 6 C -0.08 -2.96 6.33 22.36 0.14 -2.82 16 7 Cl -0.06 -2.08 28.62 -2.72 -0.08 -2.16 16 8 C -0.08 -3.23 8.66 22.28 0.19 -3.04 16 9 C -0.03 -1.07 4.46 -19.86 -0.09 -1.16 16 10 C 0.08 3.76 1.82 -12.28 -0.02 3.74 16 11 H 0.04 1.70 5.71 -2.39 -0.01 1.69 16 12 C -0.52 -26.49 8.32 25.60 0.21 -26.28 16 13 H 0.05 2.52 7.73 -2.91 -0.02 2.50 16 14 C 0.03 1.30 5.29 84.66 0.45 1.75 16 15 N -0.91 -47.74 11.29 21.45 0.24 -47.50 16 16 Si 0.94 41.43 29.54 68.60 2.03 43.46 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 C 0.07 3.22 5.86 86.30 0.51 3.72 16 21 N -0.85 -30.23 9.34 -186.71 -1.74 -31.98 16 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.09 1.98 8.05 -2.39 -0.02 1.96 16 24 H 0.06 2.10 6.53 -2.39 -0.02 2.09 16 25 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 26 H 0.13 5.10 7.19 -2.91 -0.02 5.08 16 27 H 0.26 13.23 8.31 -92.70 -0.77 12.46 16 28 H 0.04 2.02 5.95 -2.39 -0.01 2.00 16 29 H 0.03 1.55 6.90 -2.39 -0.02 1.53 16 30 H 0.34 11.41 8.99 -89.69 -0.81 10.60 16 31 H 0.33 10.48 9.08 -89.70 -0.81 9.67 16 Total: -1.00 -53.61 280.28 3.07 -50.54 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.44 Total: 21.43 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 2.30 Total: -30.15 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.50 Total: -79.47 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.76 Total: -3.65 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.08 Total: -2.16 kcal Total: -53.61 3.07 -50.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090381.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.768 kcal (2) G-P(sol) polarization free energy of solvation -53.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds