Wall clock time and date at job start Mon Mar 30 2020 07:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.97739 * 2 1 4 4 C 1.38403 * 119.98800 * 180.25311 * 3 2 1 5 5 F 1.35104 * 120.02975 * 179.78785 * 4 3 2 6 6 C 1.38580 * 119.93815 * 359.51658 * 4 3 2 7 7 Cl 1.73603 * 120.02853 * 180.22884 * 6 4 3 8 8 C 1.38287 * 119.95429 * 0.24775 * 6 4 3 9 9 C 1.38222 * 119.97260 * 179.76384 * 2 1 3 10 10 C 1.50697 * 119.97166 * 0.02562 * 9 2 1 11 11 H 1.08996 * 109.47342 * 324.97571 * 10 9 2 12 12 N 1.46894 * 109.47012 * 204.97499 * 10 9 2 13 13 C 1.53001 * 109.47125 * 84.97340 * 10 9 2 14 14 C 1.50698 * 109.46849 * 184.99985 * 13 10 9 15 15 H 1.08001 * 120.00464 * 0.02562 * 14 13 10 16 16 C 1.37888 * 119.99898 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99578 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47073 * 60.00006 * 18 16 14 20 20 H 1.48500 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47055 * 300.00152 * 18 16 14 22 22 H 1.09004 * 109.46807 * 270.23476 * 1 2 3 23 23 H 1.09003 * 109.47281 * 30.23169 * 1 2 3 24 24 H 1.09003 * 109.47285 * 150.23417 * 1 2 3 25 25 H 1.08007 * 120.00585 * 0.02562 * 3 2 1 26 26 H 1.07993 * 119.99555 * 179.97438 * 8 6 4 27 27 H 1.00906 * 110.99836 * 176.04785 * 12 10 9 28 28 H 1.00901 * 111.00413 * 300.00034 * 12 10 9 29 29 H 1.08995 * 109.47268 * 305.00035 * 13 10 9 30 30 H 1.09000 * 109.47413 * 65.00319 * 13 10 9 31 31 H 0.96997 * 119.99162 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1974 0.0000 4 6 3.5817 1.1977 -0.0053 5 9 4.2576 2.3675 -0.0096 6 6 4.2736 -0.0030 -0.0005 7 17 6.0096 -0.0054 -0.0011 8 6 3.5802 -1.1995 0.0045 9 6 2.1975 -1.1974 0.0049 10 6 1.4428 -2.5017 0.0097 11 1 0.5322 -2.3924 0.5987 12 7 2.2840 -3.5520 0.5989 13 6 1.0785 -2.8854 -1.4259 14 6 0.2194 -4.1235 -1.4123 15 1 -0.0411 -4.5897 -0.4736 16 6 -0.2341 -4.6610 -2.5983 17 7 0.0836 -4.0935 -3.7414 18 14 -1.2984 -6.1960 -2.5815 19 1 -2.5394 -5.9295 -1.8108 20 1 -1.6521 -6.5684 -3.9749 21 1 -0.5503 -7.3101 -1.9455 22 1 -0.3633 0.0042 1.0277 23 1 -0.3634 0.8879 -0.5174 24 1 -0.3634 -0.8921 -0.5102 25 1 1.6574 2.1326 0.0004 26 1 4.1186 -2.1356 0.0078 27 1 1.7778 -4.4218 0.6726 28 1 3.1350 -3.6726 0.0705 29 1 0.5297 -2.0674 -1.8925 30 1 1.9892 -3.0814 -1.9919 31 1 -0.2351 -4.4719 -4.5757 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261104575.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:50 Heat of formation + Delta-G solvation = -61.873347 kcal Electronic energy + Delta-G solvation = -16705.387328 eV Core-core repulsion = 13732.497951 eV Total energy + Delta-G solvation = -2972.889377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.98646 -40.79813 -37.80555 -36.83980 -34.49459 -33.62409 -31.13151 -29.89532 -27.94906 -26.34311 -24.04168 -22.82170 -21.30457 -18.86950 -18.36394 -17.93068 -16.94850 -16.82126 -16.58729 -15.99130 -15.48533 -14.86626 -14.66177 -14.31089 -14.26389 -14.11855 -14.06341 -13.65019 -13.37864 -12.94221 -12.76833 -12.47196 -12.35086 -12.16554 -12.02493 -11.92706 -11.75154 -11.15240 -10.57924 -9.89935 -9.63776 -9.23617 -8.19466 -6.30887 -0.05672 0.10783 0.96461 1.43493 1.44046 1.51797 2.37219 2.43913 3.04235 3.14627 3.61310 3.65691 3.90575 4.05661 4.28066 4.48019 4.58489 4.66806 4.80755 4.85150 4.87119 4.91237 5.13529 5.21787 5.43953 5.47168 5.65801 5.72730 5.79005 6.17101 6.38516 6.69172 6.85611 7.39262 8.91162 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.005354 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.474988 B = 5228.479754 C = 5619.550286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.052 4.052 3 C -0.137 4.137 4 C 0.089 3.911 5 F -0.134 7.134 6 C -0.086 4.086 7 Cl -0.055 7.055 8 C -0.074 4.074 9 C -0.071 4.071 10 C 0.141 3.859 11 H 0.087 0.913 12 N -0.832 5.832 13 C 0.011 3.989 14 C -0.534 4.534 15 H 0.068 0.932 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.960 3.040 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.267 1.267 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.170 0.830 26 H 0.145 0.855 27 H 0.348 0.652 28 H 0.333 0.667 29 H 0.000 1.000 30 H -0.013 1.013 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 8.473 8.413 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.053 4.053 3 C -0.156 4.156 4 C 0.069 3.931 5 F -0.112 7.112 6 C -0.114 4.114 7 Cl -0.026 7.026 8 C -0.093 4.093 9 C -0.072 4.072 10 C 0.029 3.971 11 H 0.105 0.895 12 N -0.361 5.361 13 C -0.027 4.027 14 C -0.572 4.572 15 H 0.086 0.914 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.217 1.217 21 H -0.192 1.192 22 H 0.113 0.887 23 H 0.107 0.893 24 H 0.082 0.918 25 H 0.188 0.812 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.146 0.854 29 H 0.019 0.981 30 H 0.006 0.994 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.576 8.965 8.890 13.429 hybrid contribution -0.153 -1.115 -1.508 1.882 sum 4.423 7.850 7.382 11.648 Atomic orbital electron populations 1.20977 0.88852 1.04060 1.03911 1.19931 0.97912 0.91152 0.96269 1.21158 0.90734 1.00278 1.03386 1.17446 0.90445 0.79928 1.05296 1.91496 1.80277 1.45396 1.94050 1.20981 0.85673 0.94132 1.10596 1.98352 1.08292 1.98908 1.97089 1.20808 0.93743 0.96629 0.98144 1.20064 0.93082 0.95733 0.98368 1.20274 0.94397 0.87574 0.94841 0.89476 1.59307 1.09068 1.11698 1.56008 1.19666 0.95090 0.95655 0.92318 1.21514 1.31492 1.11345 0.92829 0.91416 1.25880 0.97662 1.00424 0.95328 1.70098 1.46776 1.42024 0.98166 0.85580 0.79396 0.79686 0.76854 1.19188 1.21700 1.19183 0.88726 0.89336 0.91792 0.81217 0.83718 0.83797 0.85436 0.98125 0.99428 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.21 71.24 0.66 -2.50 16 2 C -0.05 -1.53 5.88 -19.87 -0.12 -1.65 16 3 C -0.14 -3.60 9.68 22.31 0.22 -3.39 16 4 C 0.09 2.58 7.28 22.39 0.16 2.74 16 5 F -0.13 -3.79 16.84 44.97 0.76 -3.03 16 6 C -0.09 -2.62 6.33 22.36 0.14 -2.48 16 7 Cl -0.06 -1.53 28.62 -2.72 -0.08 -1.61 16 8 C -0.07 -2.38 9.05 22.29 0.20 -2.18 16 9 C -0.07 -2.40 5.06 -19.86 -0.10 -2.51 16 10 C 0.14 5.23 2.29 44.17 0.10 5.33 16 11 H 0.09 3.20 6.99 -2.39 -0.02 3.18 16 12 N -0.83 -28.29 8.79 -171.82 -1.51 -29.80 16 13 C 0.01 0.53 4.35 29.85 0.13 0.66 16 14 C -0.53 -27.20 8.55 25.60 0.22 -26.98 16 15 H 0.07 3.24 7.15 -2.91 -0.02 3.22 16 16 C 0.01 0.29 5.46 84.66 0.46 0.76 16 17 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 18 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 24 H 0.06 2.05 5.48 -2.39 -0.01 2.03 16 25 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 26 H 0.15 4.43 6.29 -2.91 -0.02 4.42 16 27 H 0.35 12.00 7.90 -89.69 -0.71 11.29 16 28 H 0.33 11.00 7.21 -89.69 -0.65 10.35 16 29 H 0.00 0.02 7.02 -2.39 -0.02 0.01 16 30 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -58.11 280.30 3.38 -54.73 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.17 Total: 21.86 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 2.07 Total: -32.20 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.23 Total: -83.49 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.76 Total: -3.03 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -58.11 3.38 -54.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104575.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.145 kcal (2) G-P(sol) polarization free energy of solvation -58.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds