Wall clock time and date at job start Mon Mar 30 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.97761 * 2 1 4 4 C 1.38403 * 119.98811 * 180.23557 * 3 2 1 5 5 F 1.35104 * 120.02975 * 179.74000 * 4 3 2 6 6 C 1.38580 * 119.93815 * 359.46873 * 4 3 2 7 7 Cl 1.73597 * 120.02692 * 180.30130 * 6 4 3 8 8 C 1.38288 * 119.95406 * 0.27644 * 6 4 3 9 9 C 1.38222 * 119.97238 * 179.72717 * 2 1 3 10 10 C 1.50697 * 119.97172 * 0.02562 * 9 2 1 11 11 H 1.09002 * 109.46959 * 40.02527 * 10 9 2 12 12 N 1.46904 * 109.47010 * 160.02791 * 10 9 2 13 13 C 1.52999 * 109.47125 * 280.02750 * 10 9 2 14 14 C 1.50702 * 109.46988 * 174.99923 * 13 10 9 15 15 H 1.08007 * 119.99963 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00246 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00638 * 179.97438 * 16 14 13 18 18 Si 1.86810 * 119.99791 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47068 * 89.99526 * 18 16 14 20 20 H 1.48496 * 109.46967 * 209.99443 * 18 16 14 21 21 H 1.48499 * 109.47022 * 329.99510 * 18 16 14 22 22 H 1.09006 * 109.47096 * 270.27834 * 1 2 3 23 23 H 1.08996 * 109.47127 * 30.27708 * 1 2 3 24 24 H 1.08997 * 109.47347 * 150.27621 * 1 2 3 25 25 H 1.08007 * 120.00605 * 0.02562 * 3 2 1 26 26 H 1.07993 * 119.99506 * 180.02562 * 8 6 4 27 27 H 1.00892 * 111.00036 * 60.00147 * 12 10 9 28 28 H 1.00902 * 110.99710 * 183.96067 * 12 10 9 29 29 H 1.09004 * 109.46929 * 294.99751 * 13 10 9 30 30 H 1.08999 * 109.47398 * 55.00157 * 13 10 9 31 31 H 0.96995 * 120.00765 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1974 0.0000 4 6 3.5817 1.1977 -0.0049 5 9 4.2576 2.3675 -0.0102 6 6 4.2736 -0.0030 0.0013 7 17 6.0096 -0.0053 0.0030 8 6 3.5802 -1.1995 0.0066 9 6 2.1975 -1.1974 0.0057 10 6 1.4428 -2.5017 0.0113 11 1 0.5799 -2.4250 -0.6503 12 7 2.3244 -3.5796 -0.4565 13 6 0.9694 -2.8109 1.4330 14 6 0.1113 -4.0497 1.4185 15 1 -0.0771 -4.5652 0.4883 16 6 -0.4322 -4.5256 2.5927 17 7 -1.1815 -5.6064 2.5801 18 14 -0.1057 -3.6344 4.2018 19 1 -1.1566 -2.6085 4.4215 20 1 -0.1249 -4.6103 5.3208 21 1 1.2240 -2.9760 4.1419 22 1 -0.3633 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5095 25 1 1.6574 2.1327 0.0004 26 1 4.1186 -2.1355 0.0119 27 1 3.1324 -3.6708 0.1408 28 1 1.8236 -4.4530 -0.5233 29 1 1.8340 -2.9753 2.0761 30 1 0.3882 -1.9708 1.8132 31 1 -1.5636 -5.9415 3.4062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261104576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:52 Heat of formation + Delta-G solvation = -58.058071 kcal Electronic energy + Delta-G solvation = -16782.797146 eV Core-core repulsion = 13810.073212 eV Total energy + Delta-G solvation = -2972.723934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.99360 -40.83565 -37.82064 -36.87271 -34.50349 -33.65017 -31.18440 -30.43900 -27.96078 -26.26837 -23.77060 -22.79100 -21.29929 -19.21529 -18.44269 -17.96537 -17.02903 -16.81704 -16.42146 -15.95374 -15.51171 -15.08549 -14.68808 -14.57167 -14.31450 -14.22620 -14.04525 -13.68180 -13.48911 -13.12715 -12.75505 -12.43820 -12.24130 -12.17966 -12.01118 -11.84748 -11.72802 -11.23489 -10.78279 -9.90330 -9.67177 -9.29462 -8.29304 -6.32526 -0.07483 0.09080 0.96478 1.32727 1.36704 1.45345 2.33552 2.38395 3.03335 3.06330 3.60106 3.61375 3.86512 4.02853 4.20166 4.45799 4.59179 4.62301 4.73030 4.82463 4.84231 4.90327 5.05954 5.13416 5.29682 5.32571 5.59601 5.61795 5.73790 6.22924 6.35727 6.65389 6.75486 7.32611 8.86143 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.005945 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.850062 B = 4709.014397 C = 4929.903811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.050 4.050 3 C -0.136 4.136 4 C 0.091 3.909 5 F -0.134 7.134 6 C -0.087 4.087 7 Cl -0.055 7.055 8 C -0.072 4.072 9 C -0.074 4.074 10 C 0.146 3.854 11 H 0.087 0.913 12 N -0.835 5.835 13 C -0.031 4.031 14 C -0.519 4.519 15 H 0.047 0.953 16 C 0.014 3.986 17 N -0.944 5.944 18 Si 0.936 3.064 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.254 1.254 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.171 0.829 26 H 0.149 0.851 27 H 0.336 0.664 28 H 0.348 0.652 29 H 0.012 0.988 30 H 0.025 0.975 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 14.045 -4.465 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.051 4.051 3 C -0.154 4.154 4 C 0.071 3.929 5 F -0.112 7.112 6 C -0.115 4.115 7 Cl -0.026 7.026 8 C -0.091 4.091 9 C -0.075 4.075 10 C 0.034 3.966 11 H 0.104 0.896 12 N -0.364 5.364 13 C -0.070 4.070 14 C -0.557 4.557 15 H 0.065 0.935 16 C -0.183 4.183 17 N -0.585 5.585 18 Si 0.761 3.239 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.178 1.178 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.188 0.812 26 H 0.167 0.833 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.681 14.405 -5.036 17.556 hybrid contribution 0.045 -0.486 1.809 1.874 sum 8.725 13.919 -3.227 16.742 Atomic orbital electron populations 1.20976 0.88861 1.04381 1.03511 1.19903 0.97808 0.91120 0.96280 1.21157 0.90690 1.00292 1.03294 1.17472 0.90463 0.79937 1.05064 1.91502 1.80290 1.45442 1.94011 1.21003 0.85713 0.94156 1.10600 1.98359 1.08305 1.98905 1.97077 1.20846 0.93664 0.96723 0.97818 1.19996 0.93061 0.95420 0.99033 1.20134 0.93761 0.87480 0.95209 0.89567 1.59276 1.11184 1.09994 1.55921 1.20227 0.95949 0.95865 0.94942 1.21294 1.29830 1.10104 0.94510 0.93484 1.25798 0.94528 0.95386 1.02613 1.70033 1.35190 1.24489 1.28770 0.85876 0.79915 0.78734 0.79405 1.19189 1.21568 1.17819 0.90377 0.88551 0.91066 0.81198 0.83343 0.85162 0.83865 0.96919 0.95711 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 8.92 71.24 0.64 -2.21 16 2 C -0.05 -1.33 5.87 -19.87 -0.12 -1.45 16 3 C -0.14 -3.19 9.68 22.31 0.22 -2.97 16 4 C 0.09 2.39 7.28 22.39 0.16 2.55 16 5 F -0.13 -3.50 16.84 44.97 0.76 -2.75 16 6 C -0.09 -2.41 6.33 22.36 0.14 -2.27 16 7 Cl -0.06 -1.41 28.62 -2.72 -0.08 -1.49 16 8 C -0.07 -2.07 9.03 22.29 0.20 -1.87 16 9 C -0.07 -2.26 5.09 -19.86 -0.10 -2.36 16 10 C 0.15 5.09 2.43 44.17 0.11 5.20 16 11 H 0.09 3.11 6.41 -2.39 -0.02 3.09 16 12 N -0.83 -27.82 8.67 -171.80 -1.49 -29.31 16 13 C -0.03 -1.29 3.61 29.85 0.11 -1.19 16 14 C -0.52 -26.84 9.10 25.60 0.23 -26.61 16 15 H 0.05 2.64 7.39 -2.91 -0.02 2.62 16 16 C 0.01 0.79 5.47 84.65 0.46 1.25 16 17 N -0.94 -56.07 13.96 21.45 0.30 -55.77 16 18 Si 0.94 42.27 27.47 68.60 1.88 44.16 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 22 H 0.08 1.89 7.76 -2.38 -0.02 1.87 16 23 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 24 H 0.07 1.86 6.12 -2.39 -0.01 1.84 16 25 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.15 4.08 6.24 -2.91 -0.02 4.06 16 27 H 0.34 10.41 7.29 -89.70 -0.65 9.75 16 28 H 0.35 12.58 7.90 -89.69 -0.71 11.87 16 29 H 0.01 0.54 7.20 -2.38 -0.02 0.52 16 30 H 0.02 1.02 6.50 -2.39 -0.02 1.00 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -58.52 276.37 3.19 -55.33 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.23 Total: 21.73 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.05 Total: -31.91 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -1.19 Total: -85.08 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.76 Total: -2.75 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -58.52 3.19 -55.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.725 kcal (2) G-P(sol) polarization free energy of solvation -58.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds