Wall clock time and date at job start Mon Mar 30 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86792 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47244 * 275.40863 * 3 2 1 5 5 H 1.48509 * 109.47338 * 35.40513 * 3 2 1 6 6 H 1.48506 * 109.47472 * 155.40542 * 3 2 1 7 7 C 1.39984 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00019 * 341.72244 * 7 2 1 9 9 C 1.41040 * 119.99853 * 161.72697 * 7 2 1 10 10 C 1.40688 * 120.34733 * 330.17996 * 9 7 2 11 11 C 1.37961 * 120.51472 * 180.02562 * 10 9 7 12 12 C 1.38453 * 120.59543 * 0.02562 * 11 10 9 13 13 C 1.39190 * 119.95610 * 359.95814 * 12 11 10 14 14 C 1.46682 * 136.47449 * 180.02562 * 13 12 11 15 15 C 1.50692 * 127.36756 * 0.27677 * 14 13 12 16 16 F 1.39901 * 109.47128 * 184.71541 * 15 14 13 17 17 F 1.39906 * 109.47417 * 304.71165 * 15 14 13 18 18 F 1.39897 * 109.47435 * 64.71138 * 15 14 13 19 19 N 1.30070 * 105.26078 * 180.02562 * 14 13 12 20 20 O 1.20944 * 113.34932 * 0.02562 * 19 14 13 21 21 C 1.34177 * 112.91107 * 359.97438 * 20 19 14 22 22 H 0.96998 * 119.99686 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.74678 * 0.04089 * 10 9 7 24 24 H 1.07996 * 119.70564 * 179.97438 * 11 10 9 25 25 H 1.07996 * 120.02545 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3756 2.1123 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5925 1.4098 0.5827 7 6 2.0082 -1.2123 0.0005 8 1 1.5091 -2.1239 0.2943 9 6 3.3653 -1.2433 -0.3824 10 6 3.8623 -0.3138 -1.3143 11 6 5.1890 -0.3414 -1.6917 12 6 6.0533 -1.2837 -1.1608 13 6 5.5853 -2.2136 -0.2369 14 6 6.1514 -3.3285 0.5300 15 6 7.5770 -3.8165 0.5175 16 9 7.6828 -4.9675 1.3057 17 9 7.9565 -4.1143 -0.7958 18 9 8.4153 -2.8210 1.0308 19 7 5.1608 -3.8022 1.2273 20 8 4.1207 -3.2126 1.0445 21 6 4.2380 -2.2073 0.1637 22 1 -0.4849 0.8401 -0.0004 23 1 3.2002 0.4271 -1.7373 24 1 5.5565 0.3781 -2.4084 25 1 7.0902 -1.2966 -1.4625 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261340354.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:58 Heat of formation + Delta-G solvation = -97.307803 kcal Electronic energy + Delta-G solvation = -18715.627145 eV Core-core repulsion = 15053.571440 eV Total energy + Delta-G solvation = -3662.055705 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.36812 -48.88895 -48.86062 -45.66169 -39.20927 -36.00784 -34.88387 -32.30243 -31.80723 -28.23304 -27.42499 -24.66683 -23.96050 -22.29746 -20.18095 -19.82450 -19.78875 -19.36016 -18.52463 -17.87611 -17.23319 -16.85468 -16.17074 -15.71255 -15.68067 -15.29022 -15.05105 -15.00999 -15.00590 -14.67855 -14.18807 -13.77676 -13.58160 -13.17525 -12.89596 -12.67273 -12.47638 -11.95250 -11.88280 -11.73953 -11.13232 -9.85424 -9.53918 -9.06211 -6.66246 -0.25743 0.40215 0.87214 1.13372 1.29125 1.43700 1.52136 1.92736 2.07674 2.28739 2.40879 2.54879 3.10441 3.18742 3.43005 3.79025 3.98925 4.32879 4.59175 4.64878 4.90919 5.02237 5.29778 5.51585 5.70609 5.85983 6.09961 6.29817 6.50941 7.00606 7.99905 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.006847 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.221495 B = 4088.691255 C = 4491.313893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.052 3.948 3 Si 0.964 3.036 4 H -0.237 1.237 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.456 4.456 8 H 0.065 0.935 9 C 0.111 3.889 10 C -0.241 4.241 11 C -0.047 4.047 12 C -0.197 4.197 13 C -0.098 4.098 14 C -0.101 4.101 15 C 0.578 3.422 16 F -0.167 7.167 17 F -0.158 7.158 18 F -0.160 7.160 19 N -0.298 5.298 20 O 0.101 5.899 21 C -0.099 4.099 22 H 0.304 0.696 23 H 0.128 0.872 24 H 0.159 0.841 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.777 1.253 -2.189 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.167 4.167 3 Si 0.785 3.215 4 H -0.161 1.161 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.484 4.484 8 H 0.083 0.917 9 C 0.107 3.893 10 C -0.261 4.261 11 C -0.065 4.065 12 C -0.217 4.217 13 C -0.101 4.101 14 C -0.265 4.265 15 C 0.522 3.478 16 F -0.148 7.148 17 F -0.140 7.140 18 F -0.141 7.141 19 N 0.006 4.994 20 O 0.023 5.977 21 C -0.154 4.154 22 H 0.115 0.885 23 H 0.146 0.854 24 H 0.177 0.823 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.413 0.308 -1.306 10.499 hybrid contribution -0.021 0.532 -0.173 0.559 sum 10.392 0.840 -1.479 10.530 Atomic orbital electron populations 1.69678 1.09408 1.32649 1.32418 1.26966 0.95457 1.04391 0.89929 0.85486 0.79633 0.75552 0.80820 1.16149 1.20099 1.17422 1.19505 0.93696 0.96525 1.38644 0.91706 1.16765 0.91534 0.89527 0.91493 1.21083 0.97511 1.04422 1.03123 1.21110 0.91807 0.96478 0.97133 1.20054 1.00977 0.98462 1.02182 1.19896 0.92057 0.97248 1.00908 1.24225 0.95684 1.01907 1.04714 1.16239 0.82265 0.74962 0.74332 1.93222 1.96474 1.50526 1.74575 1.93242 1.91877 1.93137 1.35706 1.93241 1.72678 1.61302 1.86916 1.73363 0.92817 1.15898 1.17365 1.84507 1.26620 1.36381 1.50158 1.21534 0.95982 0.98057 0.99807 0.88510 0.85433 0.82329 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.26 13.93 21.84 0.30 -39.96 15 2 C 0.05 2.47 5.40 85.26 0.46 2.93 15 3 Si 0.96 36.75 24.52 68.60 1.68 38.43 15 4 H -0.24 -8.02 6.71 99.48 0.67 -7.35 15 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 6 H -0.25 -9.90 6.87 99.48 0.68 -9.21 15 7 C -0.46 -23.52 9.56 23.38 0.22 -23.30 15 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 15 9 C 0.11 5.27 5.10 -21.31 -0.11 5.16 15 10 C -0.24 -9.82 7.17 22.80 0.16 -9.66 15 11 C -0.05 -1.62 10.01 22.26 0.22 -1.39 15 12 C -0.20 -7.01 10.10 22.55 0.23 -6.79 15 13 C -0.10 -4.05 6.54 -20.28 -0.13 -4.18 15 14 C -0.10 -3.95 6.83 45.02 0.31 -3.64 15 15 C 0.58 18.67 3.56 71.23 0.25 18.92 15 16 F -0.17 -5.28 17.19 44.97 0.77 -4.50 15 17 F -0.16 -4.77 17.30 44.97 0.78 -3.99 15 18 F -0.16 -4.86 17.30 44.97 0.78 -4.09 15 19 N -0.30 -12.76 11.80 -43.52 -0.51 -13.27 15 20 O 0.10 4.71 11.12 70.31 0.78 5.50 15 21 C -0.10 -4.63 7.33 23.52 0.17 -4.46 15 22 H 0.30 13.15 8.30 -92.71 -0.77 12.38 15 23 H 0.13 4.90 4.72 -2.91 -0.01 4.88 15 24 H 0.16 3.98 8.06 -2.91 -0.02 3.96 15 25 H 0.14 4.13 8.06 -2.91 -0.02 4.11 15 Total: -1.00 -52.70 242.62 7.58 -45.12 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.20 Total: 3.17 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 1.79 Total: -26.40 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.21 Total: -53.23 kcal Atomic # 8 Polarization: 4.71 SS G_CDS: 0.78 Total: 5.50 kcal Atomic # 9 Polarization: -14.91 SS G_CDS: 2.33 Total: -12.58 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.68 Total: 38.43 kcal Total: -52.70 7.58 -45.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340354.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.188 kcal (2) G-P(sol) polarization free energy of solvation -52.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds