Wall clock time and date at job start Mon Mar 30 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86800 * 120.00164 * 2 1 4 4 H 1.48506 * 109.47333 * 270.00794 * 3 2 1 5 5 H 1.48504 * 109.46797 * 30.00312 * 3 2 1 6 6 H 1.48492 * 109.47563 * 150.00043 * 3 2 1 7 7 C 1.40056 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99998 * 198.12549 * 7 2 1 9 9 C 1.40945 * 119.99817 * 18.13171 * 7 2 1 10 10 C 1.46095 * 119.37348 * 25.15177 * 9 7 2 11 11 C 1.35169 * 120.87312 * 180.02562 * 10 9 7 12 12 C 1.45369 * 119.40054 * 0.02562 * 11 10 9 13 13 C 1.47917 * 119.72655 * 359.97438 * 12 11 10 14 14 C 1.39711 * 119.36623 * 205.17559 * 9 7 2 15 15 N 1.31637 * 104.95026 * 179.97438 * 13 12 11 16 16 O 1.21077 * 111.87947 * 0.02562 * 15 13 12 17 17 C 1.33901 * 113.63410 * 359.97438 * 16 15 13 18 18 C 1.50703 * 126.86354 * 180.02562 * 17 16 15 19 19 F 1.39904 * 109.47337 * 269.96074 * 18 17 16 20 20 F 1.39900 * 109.47235 * 29.96327 * 18 17 16 21 21 F 1.39901 * 109.47100 * 149.96263 * 18 17 16 22 22 H 0.97003 * 120.00224 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.56085 * 359.74231 * 10 9 7 24 24 H 1.08002 * 120.30012 * 180.02562 * 11 10 9 25 25 H 1.07997 * 120.10421 * 359.95066 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4402 0.7000 7 6 2.0078 -1.2129 -0.0005 8 1 3.0476 -1.2362 0.2904 9 6 1.3555 -2.4030 -0.3809 10 6 0.1965 -2.3331 -1.2676 11 6 -0.4521 -3.4552 -1.6511 12 6 0.0124 -4.7469 -1.1725 13 6 1.1859 -4.8177 -0.2748 14 6 1.8295 -3.6271 0.0975 15 7 1.3468 -6.1005 -0.0268 16 8 0.5163 -6.7769 -0.5914 17 6 -0.3517 -6.0637 -1.3201 18 6 -1.4988 -6.5984 -2.1383 19 9 -1.0590 -6.8657 -3.4393 20 9 -1.9771 -7.7772 -1.5563 21 9 -2.5251 -5.6486 -2.1790 22 1 -0.4850 0.8401 0.0004 23 1 -0.1493 -1.3717 -1.6176 24 1 -1.3077 -3.3928 -2.3072 25 1 2.6882 -3.6571 0.7518 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261358497.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:50 Heat of formation + Delta-G solvation = -93.402675 kcal Electronic energy + Delta-G solvation = -18501.381650 eV Core-core repulsion = 14839.495285 eV Total energy + Delta-G solvation = -3661.886366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.33522 -48.85770 -48.81853 -45.39331 -38.72454 -35.85574 -33.83767 -32.89628 -31.38929 -28.28313 -27.23925 -24.59377 -23.84451 -21.78786 -20.40570 -19.81001 -19.56195 -18.96966 -18.32649 -18.07526 -17.36695 -16.69607 -15.69599 -15.64702 -15.44723 -15.24460 -15.01531 -14.96138 -14.85486 -14.54313 -14.20731 -13.59439 -13.19382 -13.06492 -12.89184 -12.76490 -12.44003 -11.93462 -11.54934 -11.40613 -11.23866 -10.06087 -9.19397 -8.87509 -6.64165 -0.54454 0.66443 0.93719 1.34475 1.40286 1.48630 1.55579 2.01359 2.13357 2.34861 2.63816 3.09388 3.15150 3.30876 3.44900 3.75425 3.98593 4.31703 4.54499 4.77825 4.97574 5.33746 5.42820 5.47867 5.68406 5.89086 6.21950 6.53183 6.63267 7.42114 7.97968 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.039641 B = 0.005752 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.177089 B = 4867.035445 C = 5332.094390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.041 3.959 3 Si 0.995 3.005 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.439 4.439 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.061 4.061 11 C -0.118 4.118 12 C -0.147 4.147 13 C 0.090 3.910 14 C -0.347 4.347 15 N -0.433 5.433 16 O 0.119 5.881 17 C -0.152 4.152 18 C 0.588 3.412 19 F -0.160 7.160 20 F -0.161 7.161 21 F -0.153 7.153 22 H 0.307 0.693 23 H 0.145 0.855 24 H 0.150 0.850 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -0.888 -5.250 6.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.181 4.181 3 Si 0.814 3.186 4 H -0.177 1.177 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.110 0.890 9 C 0.106 3.894 10 C -0.079 4.079 11 C -0.137 4.137 12 C -0.151 4.151 13 C -0.051 4.051 14 C -0.373 4.373 15 N -0.148 5.148 16 O 0.058 5.942 17 C -0.220 4.220 18 C 0.532 3.468 19 F -0.141 7.141 20 F -0.143 7.143 21 F -0.134 7.134 22 H 0.119 0.881 23 H 0.162 0.838 24 H 0.168 0.832 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.870 -1.527 -4.521 6.144 hybrid contribution -0.060 0.869 -0.095 0.876 sum -3.929 -0.658 -4.616 6.097 Atomic orbital electron populations 1.69718 1.09196 1.32854 1.29180 1.27018 0.95642 1.05025 0.90385 0.84979 0.78939 0.74456 0.80255 1.17704 1.18567 1.18323 1.20177 0.99108 0.91618 1.35736 0.89000 1.18664 0.90035 0.92455 0.88272 1.22635 0.93489 0.98073 0.93727 1.21135 1.01653 0.87860 1.03016 1.21108 0.98148 0.93468 1.02371 1.21841 0.95420 0.91648 0.96237 1.19373 1.11019 0.88595 1.18309 1.74018 1.13011 1.05067 1.22663 1.84561 1.29884 1.34164 1.45600 1.23779 1.00058 0.91704 1.06447 1.16068 0.78848 0.75112 0.76737 1.93266 1.89412 1.93698 1.37728 1.93244 1.88955 1.48012 1.84049 1.93248 1.59413 1.64491 1.96279 0.88085 0.83801 0.83203 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -33.47 10.93 21.84 0.24 -33.24 15 2 C 0.04 1.70 5.12 85.29 0.44 2.13 15 3 Si 0.99 31.22 29.60 68.60 2.03 33.25 15 4 H -0.25 -7.60 7.11 99.48 0.71 -6.89 15 5 H -0.26 -7.73 7.11 99.48 0.71 -7.03 15 6 H -0.26 -8.24 7.11 99.48 0.71 -7.54 15 7 C -0.44 -20.74 8.98 23.37 0.21 -20.53 15 8 H 0.09 4.24 7.91 -2.91 -0.02 4.21 15 9 C 0.11 5.60 5.68 -20.22 -0.11 5.48 15 10 C -0.06 -2.75 8.71 23.60 0.21 -2.55 15 11 C -0.12 -4.90 9.95 23.40 0.23 -4.66 15 12 C -0.15 -6.57 6.41 -19.07 -0.12 -6.70 15 13 C 0.09 4.57 7.56 42.26 0.32 4.89 15 14 C -0.35 -18.17 9.81 23.15 0.23 -17.94 15 15 N -0.43 -21.16 12.12 -49.29 -0.60 -21.76 15 16 O 0.12 5.14 11.06 72.74 0.80 5.94 15 17 C -0.15 -6.01 6.87 25.49 0.18 -5.83 15 18 C 0.59 18.39 3.55 71.24 0.25 18.65 15 19 F -0.16 -4.71 17.30 44.97 0.78 -3.93 15 20 F -0.16 -4.72 17.30 44.97 0.78 -3.94 15 21 F -0.15 -4.58 16.43 44.97 0.74 -3.84 15 22 H 0.31 11.37 8.29 -92.71 -0.77 10.60 15 23 H 0.14 6.19 6.19 -2.91 -0.02 6.17 15 24 H 0.15 5.14 7.69 -2.91 -0.02 5.12 15 25 H 0.09 4.85 8.06 -2.91 -0.02 4.83 15 Total: -1.00 -52.95 246.84 7.86 -45.09 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.26 Total: 9.47 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 1.82 Total: -27.07 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.36 Total: -54.99 kcal Atomic # 8 Polarization: 5.14 SS G_CDS: 0.80 Total: 5.94 kcal Atomic # 9 Polarization: -14.00 SS G_CDS: 2.30 Total: -11.70 kcal Atomic # 14 Polarization: 31.22 SS G_CDS: 2.03 Total: 33.25 kcal Total: -52.95 7.86 -45.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358497.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.308 kcal (2) G-P(sol) polarization free energy of solvation -52.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds