Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47095 * 44.97876 * 6 5 4 8 8 Si 1.63092 * 114.00186 * 150.00273 * 7 6 5 9 9 C 1.86303 * 109.47271 * 59.99649 * 8 7 6 10 10 C 1.86301 * 109.47541 * 179.97438 * 8 7 6 11 11 C 1.86298 * 109.47070 * 299.99920 * 8 7 6 12 12 C 1.50700 * 109.46916 * 284.97718 * 6 5 4 13 13 N 1.27945 * 120.00088 * 234.99922 * 12 6 5 14 14 Si 1.86800 * 120.00125 * 54.99857 * 12 6 5 15 15 H 1.48503 * 109.46881 * 0.02562 * 14 12 6 16 16 H 1.48506 * 109.46928 * 120.00110 * 14 12 6 17 17 H 1.48493 * 109.47218 * 239.99945 * 14 12 6 18 18 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 19 19 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 22 22 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 23 23 H 1.09000 * 109.47079 * 164.97812 * 6 5 4 24 24 H 1.08996 * 109.46968 * 60.00140 * 9 8 7 25 25 H 1.09001 * 109.47384 * 180.02562 * 9 8 7 26 26 H 1.09001 * 109.46833 * 300.00148 * 9 8 7 27 27 H 1.09002 * 109.46927 * 59.99699 * 10 8 7 28 28 H 1.08993 * 109.47507 * 179.97438 * 10 8 7 29 29 H 1.08996 * 109.47087 * 300.00098 * 10 8 7 30 30 H 1.09001 * 109.47392 * 59.99633 * 11 8 7 31 31 H 1.09000 * 109.47286 * 180.02562 * 11 8 7 32 32 H 1.09002 * 109.46797 * 299.99932 * 11 8 7 33 33 H 0.96999 * 120.00277 * 179.97438 * 13 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 8 6.1182 -0.1828 0.9518 8 14 7.3463 -1.0251 1.6168 9 6 8.5192 -1.5747 0.2777 10 6 8.2547 0.0562 2.8318 11 6 6.6683 -2.5187 2.4999 12 6 5.9487 -0.7443 -1.3731 13 7 6.4586 -1.7452 -1.9856 14 14 5.9424 0.9403 -2.1802 15 1 5.2997 1.9225 -1.2705 16 1 7.3393 1.3621 -2.4562 17 1 5.1838 0.8755 -3.4551 18 16 2.5436 -1.4247 0.0079 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.9024 2.0875 0.0004 23 1 5.3676 -1.9813 0.2659 24 1 8.9158 -0.7008 -0.2390 25 1 9.3397 -2.1380 0.7221 26 1 7.9879 -2.2073 -0.4334 27 1 7.5687 0.3782 3.6153 28 1 9.0752 -0.5068 3.2766 29 1 8.6514 0.9299 2.3148 30 1 6.1370 -3.1513 1.7888 31 1 7.4890 -3.0814 2.9448 32 1 5.9821 -2.1972 3.2834 33 1 6.8416 -1.6294 -2.8693 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306657290.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -9.057641 kcal Electronic energy + Delta-G solvation = -15610.379753 eV Core-core repulsion = 13114.835357 eV Total energy + Delta-G solvation = -2495.544396 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89384 -38.84311 -35.94151 -33.74169 -30.33710 -29.52915 -28.46249 -28.36621 -26.75655 -24.80592 -22.04457 -20.17452 -19.48180 -18.03744 -17.16950 -16.58392 -16.33758 -15.51200 -15.41593 -14.50296 -14.29833 -14.23146 -14.03827 -13.87771 -13.79038 -13.70316 -13.41996 -13.27103 -13.16154 -13.04406 -12.89955 -12.47301 -12.19966 -12.03944 -11.83196 -11.59599 -10.73005 -10.52511 -10.36935 -10.15805 -10.08038 -9.73487 -0.39053 0.22353 0.55432 0.71006 1.10548 1.43191 1.58546 1.72942 1.85781 1.92037 2.02910 2.18697 2.45681 3.10800 3.37092 3.80509 3.91500 4.14138 4.20453 4.48765 4.61989 4.69901 4.72353 4.73282 4.75692 4.77025 4.80267 4.88924 4.90871 5.11740 5.22163 5.49169 5.57744 5.67797 6.60522 6.78890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.213 4.213 3 C 0.028 3.972 4 N -0.431 5.431 5 C 0.027 3.973 6 C 0.237 3.763 7 O -0.597 6.597 8 Si 1.250 2.750 9 C -0.516 4.516 10 C -0.464 4.464 11 C -0.508 4.508 12 C -0.025 4.025 13 N -0.606 5.606 14 Si 0.910 3.090 15 H -0.188 1.188 16 H -0.243 1.243 17 H -0.248 1.248 18 S 0.141 5.859 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.179 0.821 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -0.709 -0.146 2.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.334 4.334 3 C -0.123 4.123 4 N -0.145 5.145 5 C -0.252 4.252 6 C 0.176 3.824 7 O -0.553 6.553 8 Si 1.388 2.612 9 C -0.619 4.619 10 C -0.571 4.571 11 C -0.611 4.611 12 C -0.275 4.275 13 N -0.222 5.222 14 Si 0.724 3.276 15 H -0.108 1.108 16 H -0.166 1.166 17 H -0.171 1.171 18 S 0.396 5.604 19 H 0.098 0.902 20 H 0.102 0.898 21 H 0.092 0.908 22 H 0.196 0.804 23 H 0.115 0.885 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.948 -1.342 -0.280 2.382 hybrid contribution 0.211 0.735 -0.322 0.830 sum -1.738 -0.607 -0.602 1.937 Atomic orbital electron populations 1.20296 0.86355 1.03828 1.03316 1.26173 1.01934 0.94936 1.10404 1.21859 0.86705 1.00392 1.03362 1.66302 1.17334 1.18120 1.12764 1.26510 0.99390 0.92230 1.07028 1.18692 0.83445 0.94211 0.86083 1.85468 1.56167 1.57180 1.56518 0.77401 0.58338 0.60969 0.64532 1.27140 1.12920 1.06622 1.15203 1.26270 1.08552 1.10489 1.11756 1.26945 1.07318 1.17527 1.09273 1.30725 0.93694 1.04840 0.98271 1.68023 1.05377 1.35177 1.13644 0.85797 0.82831 0.78168 0.80823 1.10764 1.16610 1.17116 1.84077 0.97824 1.10786 1.67734 0.90178 0.89807 0.90828 0.80367 0.88469 0.91411 0.90911 0.89555 0.90698 0.90415 0.90657 0.91273 0.90505 0.90863 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.19 10.42 36.01 0.38 0.57 16 2 C -0.21 -0.03 6.60 -35.92 -0.24 -0.27 16 3 C 0.03 0.03 11.25 -19.18 -0.22 -0.18 16 4 N -0.43 -1.38 8.31 -11.86 -0.10 -1.48 16 5 C 0.03 0.06 5.71 -13.45 -0.08 -0.02 16 6 C 0.24 0.35 2.35 -29.03 -0.07 0.28 16 7 O -0.60 -0.95 7.88 -35.23 -0.28 -1.23 16 8 Si 1.25 -0.65 12.68 -169.99 -2.16 -2.81 16 9 C -0.52 -0.10 8.04 101.05 0.81 0.71 16 10 C -0.46 0.10 8.65 101.05 0.87 0.97 16 11 C -0.51 0.21 8.56 101.05 0.87 1.08 16 12 C -0.02 -0.03 3.96 -13.90 -0.05 -0.09 16 13 N -0.61 -0.42 11.80 56.23 0.66 0.25 16 14 Si 0.91 1.63 27.54 -169.99 -4.68 -3.06 16 15 H -0.19 -0.57 6.19 56.52 0.35 -0.22 16 16 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 17 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 18 S 0.14 0.07 23.18 -107.50 -2.49 -2.42 16 19 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 20 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 21 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 22 H 0.18 -0.18 8.06 -52.49 -0.42 -0.60 16 23 H 0.10 -0.02 6.12 -51.93 -0.32 -0.34 16 24 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 25 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 26 H 0.09 0.07 5.71 -51.93 -0.30 -0.23 16 27 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 28 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 30 H 0.07 -0.04 7.10 -51.93 -0.37 -0.41 16 31 H 0.08 -0.06 7.96 -51.93 -0.41 -0.48 16 32 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 33 H 0.35 -0.34 8.23 -40.82 -0.34 -0.67 16 LS Contribution 292.72 15.07 4.41 4.41 Total: 0.00 -3.86 292.72 -7.11 -10.96 By element: Atomic # 1 Polarization: -2.93 SS G_CDS: -4.75 Total: -7.68 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 2.27 Total: 3.05 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: 0.56 Total: -1.23 kcal Atomic # 8 Polarization: -0.95 SS G_CDS: -0.28 Total: -1.23 kcal Atomic # 14 Polarization: 0.98 SS G_CDS: -6.84 Total: -5.86 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.49 Total: -2.42 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -3.86 -7.11 -10.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306657290.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.907 kcal (2) G-P(sol) polarization free energy of solvation -3.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds