Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47095 * 44.97876 * 6 5 4 8 8 Si 1.63092 * 114.00186 * 150.00273 * 7 6 5 9 9 C 1.86303 * 109.47271 * 59.99649 * 8 7 6 10 10 C 1.86301 * 109.47541 * 179.97438 * 8 7 6 11 11 C 1.86298 * 109.47070 * 299.99920 * 8 7 6 12 12 C 1.50700 * 109.46916 * 284.97718 * 6 5 4 13 13 N 1.27945 * 120.00088 * 234.99922 * 12 6 5 14 14 Si 1.86800 * 120.00125 * 54.99857 * 12 6 5 15 15 H 1.48503 * 109.46881 * 0.02562 * 14 12 6 16 16 H 1.48506 * 109.46928 * 120.00110 * 14 12 6 17 17 H 1.48493 * 109.47218 * 239.99945 * 14 12 6 18 18 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 19 19 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 22 22 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 23 23 H 1.09000 * 109.47079 * 164.97812 * 6 5 4 24 24 H 1.08996 * 109.46968 * 60.00140 * 9 8 7 25 25 H 1.09001 * 109.47384 * 180.02562 * 9 8 7 26 26 H 1.09001 * 109.46833 * 300.00148 * 9 8 7 27 27 H 1.09002 * 109.46927 * 59.99699 * 10 8 7 28 28 H 1.08993 * 109.47507 * 179.97438 * 10 8 7 29 29 H 1.08996 * 109.47087 * 300.00098 * 10 8 7 30 30 H 1.09001 * 109.47392 * 59.99633 * 11 8 7 31 31 H 1.09000 * 109.47286 * 180.02562 * 11 8 7 32 32 H 1.09002 * 109.46797 * 299.99932 * 11 8 7 33 33 H 0.96999 * 120.00277 * 179.97438 * 13 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 8 6.1182 -0.1828 0.9518 8 14 7.3463 -1.0251 1.6168 9 6 8.5192 -1.5747 0.2777 10 6 8.2547 0.0562 2.8318 11 6 6.6683 -2.5187 2.4999 12 6 5.9487 -0.7443 -1.3731 13 7 6.4586 -1.7452 -1.9856 14 14 5.9424 0.9403 -2.1802 15 1 5.2997 1.9225 -1.2705 16 1 7.3393 1.3621 -2.4562 17 1 5.1838 0.8755 -3.4551 18 16 2.5436 -1.4247 0.0079 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.9024 2.0875 0.0004 23 1 5.3676 -1.9813 0.2659 24 1 8.9158 -0.7008 -0.2390 25 1 9.3397 -2.1380 0.7221 26 1 7.9879 -2.2073 -0.4334 27 1 7.5687 0.3782 3.6153 28 1 9.0752 -0.5068 3.2766 29 1 8.6514 0.9299 2.3148 30 1 6.1370 -3.1513 1.7888 31 1 7.4890 -3.0814 2.9448 32 1 5.9821 -2.1972 3.2834 33 1 6.8416 -1.6294 -2.8693 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306657290.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -0.224944 kcal Electronic energy + Delta-G solvation = -15609.996739 eV Core-core repulsion = 13114.835357 eV Total energy + Delta-G solvation = -2495.161382 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94211 -38.88847 -36.00627 -33.69176 -30.34127 -29.50474 -28.42528 -28.35616 -26.73492 -24.82633 -22.09451 -20.20654 -19.52397 -18.08790 -17.21457 -16.61677 -16.42085 -15.51790 -15.42643 -14.61882 -14.29358 -14.19762 -13.96929 -13.80637 -13.73872 -13.62147 -13.40125 -13.24059 -13.14358 -13.05620 -12.95828 -12.51022 -12.25345 -12.10660 -11.86948 -11.68947 -10.71540 -10.54567 -10.43181 -10.19348 -10.13938 -9.75897 -0.42335 0.21275 0.47153 0.67957 0.98811 1.35866 1.43282 1.64877 1.85848 1.89551 2.02143 2.07760 2.47158 3.09520 3.33977 3.77502 4.01601 4.17899 4.27093 4.58671 4.73014 4.74834 4.76235 4.77342 4.78661 4.81389 4.88306 4.89563 5.04933 5.12723 5.26859 5.52912 5.61014 5.67015 6.58082 6.75085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.208 4.208 3 C 0.008 3.992 4 N -0.457 5.457 5 C 0.008 3.992 6 C 0.231 3.769 7 O -0.612 6.612 8 Si 1.274 2.726 9 C -0.522 4.522 10 C -0.472 4.472 11 C -0.512 4.512 12 C -0.024 4.024 13 N -0.604 5.604 14 Si 0.923 3.077 15 H -0.208 1.208 16 H -0.245 1.245 17 H -0.254 1.254 18 S 0.155 5.845 19 H 0.089 0.911 20 H 0.095 0.905 21 H 0.080 0.920 22 H 0.193 0.807 23 H 0.112 0.888 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -1.351 -0.044 2.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.329 4.329 3 C -0.143 4.143 4 N -0.172 5.172 5 C -0.269 4.269 6 C 0.169 3.831 7 O -0.568 6.568 8 Si 1.411 2.589 9 C -0.624 4.624 10 C -0.579 4.579 11 C -0.614 4.614 12 C -0.275 4.275 13 N -0.221 5.221 14 Si 0.739 3.261 15 H -0.129 1.129 16 H -0.168 1.168 17 H -0.178 1.178 18 S 0.409 5.591 19 H 0.108 0.892 20 H 0.114 0.886 21 H 0.099 0.901 22 H 0.210 0.790 23 H 0.130 0.870 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.396 -1.981 -0.189 3.114 hybrid contribution 0.321 0.948 -0.362 1.064 sum -2.075 -1.033 -0.551 2.382 Atomic orbital electron populations 1.20424 0.84482 1.04764 1.04178 1.26531 1.03112 0.94383 1.08872 1.22148 0.86409 1.01499 1.04209 1.66294 1.18504 1.18948 1.13473 1.26671 1.00169 0.92426 1.07684 1.18837 0.83302 0.94891 0.86038 1.85460 1.56679 1.58004 1.56695 0.76979 0.57492 0.60551 0.63835 1.27209 1.13313 1.06464 1.15368 1.26360 1.08958 1.10629 1.11913 1.26964 1.07535 1.17598 1.09325 1.30583 0.94111 1.04338 0.98463 1.67998 1.05013 1.34900 1.14155 0.85590 0.82161 0.78316 0.80016 1.12894 1.16825 1.17756 1.83946 0.97180 1.10642 1.67305 0.89226 0.88595 0.90135 0.78995 0.87042 0.91831 0.90354 0.89993 0.90965 0.89532 0.91012 0.91025 0.89940 0.91024 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.46 10.42 71.24 0.74 1.21 16 2 C -0.21 -0.02 6.60 24.64 0.16 0.14 16 3 C 0.01 0.02 11.25 83.65 0.94 0.96 16 4 N -0.46 -3.38 8.31 -191.44 -1.59 -4.97 16 5 C 0.01 0.04 5.71 88.52 0.51 0.55 16 6 C 0.23 0.79 2.35 29.10 0.07 0.86 16 7 O -0.61 -2.41 7.88 -148.98 -1.17 -3.59 16 8 Si 1.27 -1.01 12.68 68.60 0.87 -0.14 16 9 C -0.52 -0.25 8.04 113.37 0.91 0.66 16 10 C -0.47 0.04 8.65 113.37 0.98 1.02 16 11 C -0.51 0.55 8.56 113.37 0.97 1.52 16 12 C -0.02 -0.07 3.96 88.67 0.35 0.28 16 13 N -0.60 -0.87 11.80 24.11 0.28 -0.58 16 14 Si 0.92 4.31 27.54 68.60 1.89 6.20 16 15 H -0.21 -1.67 6.19 99.48 0.62 -1.05 16 16 H -0.24 -1.11 7.11 99.48 0.71 -0.40 16 17 H -0.25 -1.33 7.11 99.48 0.71 -0.62 16 18 S 0.16 0.16 23.18 -56.49 -1.31 -1.15 16 19 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 20 H 0.10 -0.77 8.14 -2.39 -0.02 -0.78 16 21 H 0.08 -0.55 8.14 -2.38 -0.02 -0.57 16 22 H 0.19 -0.28 8.06 -2.91 -0.02 -0.31 16 23 H 0.11 -0.04 6.12 -2.39 -0.01 -0.05 16 24 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 25 H 0.08 -0.07 7.96 -2.39 -0.02 -0.08 16 26 H 0.08 0.12 5.71 -2.39 -0.01 0.11 16 27 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 28 H 0.09 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 30 H 0.07 -0.11 7.10 -2.39 -0.02 -0.13 16 31 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 32 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 33 H 0.36 -0.68 8.23 -92.71 -0.76 -1.44 16 Total: 0.00 -8.99 292.72 5.61 -3.38 By element: Atomic # 1 Polarization: -7.37 SS G_CDS: 1.01 Total: -6.37 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.63 Total: 7.21 kcal Atomic # 7 Polarization: -4.25 SS G_CDS: -1.31 Total: -5.56 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -1.17 Total: -3.59 kcal Atomic # 14 Polarization: 3.31 SS G_CDS: 2.76 Total: 6.07 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.31 Total: -1.15 kcal Total: -8.99 5.61 -3.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306657290.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.157 kcal (2) G-P(sol) polarization free energy of solvation -8.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds