Wall clock time and date at job start Mon Mar 30 2020 06:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47106 * 240.00393 * 3 2 1 5 5 H 1.48507 * 109.46748 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47404 * 119.99729 * 3 2 1 7 7 C 1.37876 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00212 * 158.24729 * 7 2 1 9 9 C 1.50696 * 119.99803 * 338.24493 * 7 2 1 10 10 C 1.53001 * 115.55069 * 324.29973 * 9 7 2 11 11 N 1.46499 * 109.47389 * 279.47592 * 10 9 7 12 12 C 1.40933 * 120.00015 * 183.02147 * 11 10 9 13 13 C 1.38773 * 122.62028 * 0.10562 * 12 11 10 14 14 C 1.33400 * 114.88573 * 180.27203 * 13 12 11 15 15 S 1.75860 * 109.70923 * 359.97438 * 14 13 12 16 16 C 1.33820 * 122.61546 * 180.39759 * 12 11 10 17 17 Cl 1.73601 * 125.20163 * 359.72648 * 16 12 11 18 18 C 1.52995 * 117.51859 * 110.00232 * 9 7 2 19 19 C 1.52995 * 60.00246 * 107.48091 * 18 9 7 20 20 H 0.97007 * 119.99971 * 354.94522 * 1 2 3 21 21 H 1.09000 * 109.47022 * 159.47949 * 10 9 7 22 22 H 1.08994 * 109.47205 * 39.48187 * 10 9 7 23 23 H 0.97006 * 119.99696 * 3.02171 * 11 10 9 24 24 H 1.07996 * 122.55815 * 0.26574 * 13 12 11 25 25 H 1.08006 * 125.14889 * 180.02562 * 14 13 12 26 26 H 1.09002 * 117.50182 * 214.97121 * 18 9 7 27 27 H 1.08999 * 117.49786 * 359.97438 * 18 9 7 28 28 H 1.09004 * 117.50145 * 252.51205 * 19 18 9 29 29 H 1.09008 * 117.51811 * 107.47833 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0268 -1.2272 -0.3472 9 6 1.3315 -2.4528 0.4826 10 6 0.3591 -2.2747 1.6504 11 7 1.1113 -2.2017 2.9054 12 6 0.4260 -2.1015 4.1328 13 6 -0.9589 -2.0697 4.2160 14 6 -1.4447 -1.9667 5.4541 15 16 -0.1191 -1.9041 6.6081 16 6 1.0600 -2.0238 5.3087 17 17 2.7831 -2.0396 5.5195 18 6 0.9942 -3.5194 -0.5612 19 6 2.1387 -3.7514 0.4273 20 1 -0.4850 0.8368 0.0740 21 1 -0.3253 -3.1224 1.6858 22 1 -0.2089 -1.3547 1.5131 23 1 2.0810 -2.2224 2.8916 24 1 -1.5949 -2.1241 3.3448 25 1 -2.4935 -1.9284 5.7094 26 1 0.0795 -4.0942 -0.4160 27 1 1.2586 -3.3105 -1.5977 28 1 3.1565 -3.6953 0.0410 29 1 1.9773 -4.4787 1.2231 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307377363.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:27 Heat of formation + Delta-G solvation = 54.588992 kcal Electronic energy + Delta-G solvation = -14766.745705 eV Core-core repulsion = 12229.286595 eV Total energy + Delta-G solvation = -2537.459109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.44848 -36.71623 -35.97432 -32.72104 -32.30263 -28.62276 -25.84012 -24.51536 -23.18167 -21.23257 -19.29353 -18.64494 -17.50531 -16.78193 -15.65296 -14.78443 -14.20257 -13.89933 -13.53733 -13.38134 -13.23773 -12.94095 -12.11299 -11.98297 -11.73178 -11.18762 -10.94134 -10.92425 -10.77984 -10.53813 -10.36055 -10.29247 -9.50371 -9.43585 -9.09091 -8.81658 -8.22362 -8.11522 -6.70214 -6.21980 -4.17765 1.29969 1.68116 2.23918 2.86909 3.23463 3.25095 3.31768 3.36677 4.30115 4.32709 4.87733 5.23372 5.48283 5.66798 5.91184 6.02848 6.24657 6.25756 6.43101 6.49765 6.60165 6.61171 6.83290 6.96465 7.25401 7.47779 7.81396 8.01994 8.28562 8.47901 8.77436 9.40114 10.81150 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.007277 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.903641 B = 3847.079860 C = 4055.763997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.078 3.922 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.494 4.494 8 H 0.062 0.938 9 C 0.040 3.960 10 C 0.148 3.852 11 N -0.709 5.709 12 C 0.227 3.773 13 C -0.149 4.149 14 C -0.181 4.181 15 S 0.101 5.899 16 C -0.275 4.275 17 Cl -0.036 7.036 18 C -0.193 4.193 19 C -0.208 4.208 20 H 0.264 0.736 21 H 0.026 0.974 22 H 0.110 0.890 23 H 0.402 0.598 24 H 0.149 0.851 25 H 0.167 0.833 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 -3.690 10.031 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.125 4.125 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.530 4.530 8 H 0.080 0.920 9 C 0.040 3.960 10 C 0.025 3.975 11 N -0.336 5.336 12 C 0.109 3.891 13 C -0.183 4.183 14 C -0.318 4.318 15 S 0.357 5.643 16 C -0.426 4.426 17 Cl -0.008 7.008 18 C -0.232 4.232 19 C -0.245 4.245 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.127 0.873 23 H 0.238 0.762 24 H 0.166 0.834 25 H 0.185 0.815 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.192 -3.450 11.289 12.006 hybrid contribution 0.898 0.691 -1.594 1.956 sum -1.294 -2.759 9.694 10.162 Atomic orbital electron populations 1.69986 1.06150 1.27481 1.46502 1.24855 0.94548 0.99096 0.94050 0.86827 0.80213 0.83241 0.78929 1.20142 1.21166 1.19937 1.20445 0.98202 0.90953 1.43383 0.92026 1.19079 0.95450 0.88313 0.93207 1.21299 0.93601 1.02127 0.80463 1.45043 1.08556 1.78303 1.01743 1.16790 0.91074 0.94796 0.86400 1.19799 0.93313 1.06669 0.98536 1.25411 1.02440 1.07971 0.95937 1.83782 0.94648 1.77333 1.08508 1.23595 0.88562 1.34214 0.96195 1.98277 1.07677 1.97999 1.96825 1.22954 0.97218 1.06580 0.96400 1.22861 0.95987 1.03074 1.02626 0.92625 0.95599 0.87255 0.76245 0.83381 0.81523 0.91624 0.90161 0.90559 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.96 11.13 55.43 0.62 -22.35 15 2 C 0.08 2.05 5.04 -17.82 -0.09 1.96 15 3 Si 0.88 20.52 29.59 -169.99 -5.03 15.48 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.49 -12.84 8.98 -34.44 -0.31 -13.15 15 8 H 0.06 1.62 7.91 -52.49 -0.41 1.21 15 9 C 0.04 0.95 1.73 -155.66 -0.27 0.68 15 10 C 0.15 3.26 4.84 -4.04 -0.02 3.24 15 11 N -0.71 -14.46 5.74 -59.63 -0.34 -14.80 15 12 C 0.23 4.20 6.61 -85.02 -0.56 3.64 15 13 C -0.15 -2.42 9.44 -41.07 -0.39 -2.81 15 14 C -0.18 -2.45 11.22 29.04 0.33 -2.13 15 15 S 0.10 1.42 23.33 -107.50 -2.51 -1.09 15 16 C -0.27 -4.75 7.11 29.18 0.21 -4.55 15 17 Cl -0.04 -0.60 28.51 -51.86 -1.48 -2.07 15 18 C -0.19 -4.21 9.88 -26.74 -0.26 -4.48 15 19 C -0.21 -4.34 9.91 -26.73 -0.26 -4.60 15 20 H 0.26 6.74 8.32 -40.82 -0.34 6.40 15 21 H 0.03 0.54 7.81 -51.93 -0.41 0.13 15 22 H 0.11 2.68 5.41 -51.93 -0.28 2.40 15 23 H 0.40 8.38 7.80 -40.82 -0.32 8.06 15 24 H 0.15 2.37 7.33 -52.49 -0.38 1.98 15 25 H 0.17 1.68 8.06 -52.48 -0.42 1.26 15 26 H 0.07 1.34 8.08 -51.93 -0.42 0.92 15 27 H 0.08 1.78 8.14 -51.93 -0.42 1.36 15 28 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 29 H 0.07 1.35 8.14 -51.92 -0.42 0.93 15 LS Contribution 279.52 15.07 4.21 4.21 Total: -1.00 -26.06 279.52 -9.21 -35.28 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -3.05 Total: 7.53 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.63 Total: -22.20 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.27 Total: -37.15 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.51 Total: -1.09 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.06 -9.21 -35.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307377363.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.868 kcal (2) G-P(sol) polarization free energy of solvation -26.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds