Wall clock time and date at job start Mon Mar 30 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 S 1.77239 * 127.79165 * 97.34546 * 3 2 1 5 5 N 1.69645 * 95.35428 * 180.19958 * 4 3 2 6 6 C 1.29995 * 107.83121 * 359.82083 * 5 4 3 7 7 Cl 1.73600 * 120.79290 * 180.02562 * 6 5 4 8 8 C 1.37961 * 118.41430 * 0.02562 * 6 5 4 9 9 N 1.39687 * 123.00472 * 179.97438 * 8 6 5 10 10 C 1.46898 * 110.99974 * 60.02521 * 9 8 6 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47046 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46873 * 120.00118 * 16 14 12 19 19 H 1.48497 * 109.47510 * 240.00153 * 16 14 12 20 20 H 1.00895 * 111.00390 * 296.06304 * 9 8 6 21 21 H 1.09001 * 109.47062 * 59.99667 * 10 9 8 22 22 H 1.08993 * 109.47084 * 299.99114 * 10 9 8 23 23 H 1.09001 * 109.46801 * 300.00064 * 11 10 9 24 24 H 1.09001 * 109.46998 * 59.99660 * 11 10 9 25 25 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.6540 0.1802 -1.3891 5 7 5.0859 0.0587 -0.4874 6 6 4.7581 -0.1002 0.7605 7 17 5.9772 -0.2618 1.9859 8 6 3.4184 -0.1374 1.0878 9 7 2.9592 -0.3042 2.3964 10 6 3.4376 0.7801 3.2644 11 6 2.9148 0.5637 4.6860 12 6 3.4061 1.6757 5.5766 13 1 4.0285 2.4587 5.1693 14 6 3.0600 1.6940 6.9111 15 7 2.3017 0.7408 7.4069 16 14 3.6684 3.0728 8.0148 17 1 4.4981 4.0136 7.2200 18 1 2.5058 3.7995 8.5855 19 1 4.4844 2.5017 9.1163 20 1 3.2280 -1.2053 2.7619 21 1 3.0746 1.7356 2.8856 22 1 4.5275 0.7835 3.2743 23 1 1.8249 0.5605 4.6757 24 1 3.2774 -0.3919 5.0649 25 1 2.0586 0.7535 8.3458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307723547.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:43 Heat of formation + Delta-G solvation = 69.102485 kcal Electronic energy + Delta-G solvation = -13885.639220 eV Core-core repulsion = 11245.269119 eV Total energy + Delta-G solvation = -2640.370100 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.008 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.84951 -36.95088 -36.43686 -35.65126 -33.09293 -31.22537 -28.92866 -25.46080 -24.11855 -21.76972 -20.89688 -18.96212 -17.80708 -16.43616 -16.11354 -15.52530 -14.85208 -14.49325 -14.34957 -13.60540 -13.59560 -13.13087 -13.07333 -12.30156 -11.91292 -11.79289 -11.42268 -11.40767 -11.12077 -10.99978 -10.60636 -10.20892 -9.82959 -9.56319 -9.25820 -8.84037 -8.51584 -8.33486 -6.06248 -4.09340 -0.26563 0.46267 0.73395 1.60256 2.15679 2.72661 3.10313 3.28119 3.36059 3.39491 3.69744 4.11212 4.41141 4.55319 4.98795 5.30500 5.73713 6.05529 6.15530 6.76029 7.02718 7.28188 7.37952 7.61235 7.74129 7.94903 8.31963 8.97144 9.55132 11.05082 Molecular weight = 257.01amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.005684 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.489942 B = 4924.759343 C = 5678.446984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C 0.297 3.703 3 C -0.093 4.093 4 S 0.343 5.657 5 N -0.431 5.431 6 C 0.131 3.869 7 Cl 0.027 6.973 8 C 0.111 3.889 9 N -0.626 5.626 10 C 0.052 3.948 11 C 0.028 3.972 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 H 0.363 0.637 21 H 0.065 0.935 22 H 0.046 0.954 23 H 0.027 0.973 24 H 0.019 0.981 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -3.133 -16.092 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.054 5.054 2 C -0.020 4.020 3 C -0.226 4.226 4 S 0.492 5.508 5 N -0.256 5.256 6 C -0.075 4.075 7 Cl 0.055 6.945 8 C -0.007 4.007 9 N -0.260 5.260 10 C -0.073 4.073 11 C -0.010 4.010 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.189 0.811 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.996 -2.670 -17.914 18.548 hybrid contribution 1.278 0.282 2.679 2.981 sum 5.274 -2.388 -15.236 16.299 Atomic orbital electron populations 1.81296 1.10563 1.07075 1.06458 1.23325 0.89785 0.94558 0.94288 1.21067 0.90750 1.11803 0.98962 1.85139 0.89759 1.66163 1.09783 1.76327 1.20711 1.21979 1.06623 1.23002 0.91527 1.02790 0.90207 1.98474 1.53162 1.95304 1.47602 1.19024 0.86994 1.00540 0.94165 1.58209 1.61979 1.08551 0.97309 1.22685 0.98591 0.91203 0.94845 1.19076 0.97422 0.97361 0.87105 1.21120 1.31751 1.09329 0.93858 0.92517 1.24983 0.95059 0.96009 0.98172 1.69974 1.36352 1.32734 1.13948 0.86531 0.78636 0.82182 0.80632 1.19687 1.20959 1.20983 0.81086 0.91665 0.93577 0.95472 0.96302 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.89 18.54 41.84 0.78 -5.12 15 2 C 0.30 4.14 15.83 -22.47 -0.36 3.78 15 3 C -0.09 -1.15 6.64 -37.46 -0.25 -1.40 15 4 S 0.34 3.33 23.94 -107.50 -2.57 0.76 15 5 N -0.43 -5.28 12.04 31.77 0.38 -4.90 15 6 C 0.13 1.73 7.02 -18.43 -0.13 1.60 15 7 Cl 0.03 0.36 26.04 -51.86 -1.35 -0.99 15 8 C 0.11 1.53 5.65 -84.19 -0.48 1.05 15 9 N -0.63 -10.09 6.26 -58.65 -0.37 -10.45 15 10 C 0.05 1.00 5.26 -3.82 -0.02 0.98 15 11 C 0.03 0.68 5.23 -27.88 -0.15 0.54 15 12 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 15 13 H 0.06 1.49 7.74 -52.48 -0.41 1.09 15 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 15 N -0.89 -26.10 13.29 55.43 0.74 -25.37 15 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 20 H 0.36 5.39 8.76 -39.29 -0.34 5.05 15 21 H 0.06 1.29 8.14 -51.93 -0.42 0.86 15 22 H 0.05 0.84 5.08 -51.93 -0.26 0.58 15 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 265.47 15.07 4.00 4.00 Total: -1.00 -29.30 265.47 -6.62 -35.92 By element: Atomic # 1 Polarization: -2.24 SS G_CDS: -1.42 Total: -3.66 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.79 Total: -6.34 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 1.53 Total: -45.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.57 Total: 0.76 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.35 Total: -0.99 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.30 -6.62 -35.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307723547.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.022 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds