Wall clock time and date at job start Mon Mar 30 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00046 * 2 1 4 4 H 1.48496 * 109.47607 * 270.00569 * 3 2 1 5 5 H 1.48501 * 109.47152 * 30.00568 * 3 2 1 6 6 H 1.48506 * 109.47113 * 150.00616 * 3 2 1 7 7 C 1.37876 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00401 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47390 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00159 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47412 * 180.02562 * 11 10 9 13 13 S 1.81399 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.81394 * 102.99894 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46854 * 179.97438 * 14 13 12 16 16 C 1.33390 * 125.20302 * 90.00409 * 15 14 13 17 17 C 1.38422 * 114.92003 * 179.97438 * 16 15 14 18 18 C 1.33389 * 114.92225 * 359.97438 * 17 16 15 19 19 S 1.75882 * 125.20316 * 269.69162 * 15 14 13 20 20 H 0.97000 * 119.99828 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47117 * 59.99859 * 9 7 2 22 22 H 1.08999 * 109.47412 * 300.00014 * 9 7 2 23 23 H 1.00903 * 111.00181 * 303.95864 * 10 9 7 24 24 H 1.09001 * 109.47271 * 60.00184 * 11 10 9 25 25 H 1.09004 * 109.47041 * 300.00031 * 11 10 9 26 26 H 1.09001 * 109.46962 * 59.99737 * 12 11 10 27 27 H 1.09004 * 109.46832 * 299.99901 * 12 11 10 28 28 H 1.09002 * 109.47501 * 299.99574 * 14 13 12 29 29 H 1.08998 * 109.47135 * 60.00434 * 14 13 12 30 30 H 1.07998 * 122.53920 * 359.94900 * 16 15 14 31 31 H 1.07998 * 122.54265 * 180.02562 * 17 16 15 32 32 H 1.08004 * 125.20242 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4696 -2.6183 -0.0009 12 6 5.9410 -4.0739 -0.0015 13 16 7.7543 -4.1223 -0.0022 14 6 8.1150 -5.9001 -0.0019 15 6 9.6073 -6.1098 -0.0031 16 6 10.3697 -6.2166 1.0862 17 6 11.7181 -6.4067 0.8381 18 6 12.0508 -6.4549 -0.4528 19 16 10.6091 -6.2590 -1.4410 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6801 -0.8911 23 1 3.6259 -3.0952 0.7806 24 1 5.8465 -2.1143 0.8890 25 1 5.8465 -2.1144 -0.8910 26 1 5.5640 -4.5775 -0.8916 27 1 5.5640 -4.5782 0.8884 28 1 7.6841 -6.3582 0.8884 29 1 7.6834 -6.3585 -0.8917 30 1 9.9655 -6.1586 2.0861 31 1 12.4457 -6.5092 1.6296 32 1 13.0517 -6.5967 -0.8329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308521329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:13 Heat of formation + Delta-G solvation = 26.790264 kcal Electronic energy + Delta-G solvation = -13525.457288 eV Core-core repulsion = 11124.669537 eV Total energy + Delta-G solvation = -2400.787752 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.16143 -35.93336 -32.67034 -32.33602 -30.38320 -27.15173 -26.41412 -23.50173 -22.02277 -21.15979 -19.56316 -17.57322 -16.80637 -16.19661 -15.74723 -15.50296 -14.78729 -14.51916 -14.07483 -13.61146 -13.34466 -13.16689 -12.87303 -12.73507 -12.31838 -12.11496 -12.08356 -11.45008 -11.20018 -11.02374 -10.63579 -10.50637 -10.12637 -9.85823 -9.33628 -8.89915 -8.74910 -8.61381 -7.75111 -7.57067 -6.08413 -4.07011 0.49080 1.30280 1.64653 1.72285 2.44099 2.63167 3.28356 3.35428 3.38072 4.31527 4.40290 4.68940 4.78260 4.97798 5.06707 5.09075 5.24082 5.28339 5.30688 5.41108 5.67268 5.79399 5.96545 6.04907 6.15614 6.16370 6.72455 6.96804 7.54284 7.80462 8.23117 8.60009 8.98662 9.53045 11.04717 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.060547 B = 0.002940 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.337099 B = 9522.207417 C = 9641.463539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.677 5.677 11 C 0.072 3.928 12 C -0.081 4.081 13 S -0.248 6.248 14 C -0.017 4.017 15 C -0.163 4.163 16 C -0.122 4.122 17 C -0.135 4.135 18 C -0.214 4.214 19 S 0.118 5.882 20 H 0.264 0.736 21 H -0.014 1.014 22 H 0.024 0.976 23 H 0.336 0.664 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.624 -14.293 0.761 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.309 5.309 11 C -0.058 4.058 12 C -0.230 4.230 13 S -0.020 6.020 14 C -0.167 4.167 15 C -0.282 4.282 16 C -0.156 4.156 17 C -0.166 4.166 18 C -0.350 4.350 19 S 0.381 5.619 20 H 0.074 0.926 21 H 0.004 0.996 22 H 0.042 0.958 23 H 0.153 0.847 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 23.802 -13.339 -1.503 27.326 hybrid contribution 0.031 0.169 2.408 2.414 sum 23.833 -13.170 0.905 27.245 Atomic orbital electron populations 1.69895 1.06168 1.26964 1.50792 1.24901 0.94772 0.98998 0.94628 0.86817 0.80262 0.83744 0.78686 1.20050 1.21138 1.19214 1.21032 0.88802 0.94879 1.50914 0.90259 1.20014 0.96711 0.84575 0.95001 1.60525 1.03547 1.17298 1.49510 1.21589 0.90978 0.92208 1.01069 1.23455 0.91671 1.02415 1.05462 1.87137 1.08952 1.07811 1.98138 1.21706 0.92278 0.96545 1.06133 1.23765 0.97770 1.10109 0.96522 1.20164 0.93119 1.02844 0.99426 1.20155 0.96228 1.03667 0.96504 1.25694 1.02232 1.10108 0.97009 1.84386 0.97895 1.70645 1.08967 0.92579 0.99610 0.95817 0.84682 0.95260 0.90762 0.89109 0.90187 0.88237 0.88939 0.84016 0.84148 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.90 9.87 -34.44 -0.34 -15.24 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 C 0.16 4.05 4.51 -4.98 -0.02 4.03 16 10 N -0.68 -13.98 6.49 -115.06 -0.75 -14.73 16 11 C 0.07 1.23 5.69 -3.82 -0.02 1.21 16 12 C -0.08 -1.11 6.20 37.16 0.23 -0.88 16 13 S -0.25 -3.21 21.72 -107.50 -2.33 -5.54 16 14 C -0.02 -0.17 6.43 36.01 0.23 0.06 16 15 C -0.16 -1.62 5.77 -36.00 -0.21 -1.83 16 16 C -0.12 -1.11 10.05 -41.21 -0.41 -1.53 16 17 C -0.13 -1.09 10.18 -41.21 -0.42 -1.51 16 18 C -0.21 -1.69 11.23 29.04 0.33 -1.36 16 19 S 0.12 1.08 23.33 -107.50 -2.51 -1.43 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H -0.01 -0.34 7.20 -51.93 -0.37 -0.71 16 22 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 23 H 0.34 6.59 8.72 -39.29 -0.34 6.24 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 27 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 28 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.16 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 302.00 15.07 4.55 4.55 Total: -1.00 -31.08 302.00 -10.17 -41.25 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.50 Total: 0.92 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -0.73 Total: -15.13 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.03 Total: -41.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -4.84 Total: -6.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.08 -10.17 -41.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308521329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.042 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds