Wall clock time and date at job start Mon Mar 30 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76194 * 103.00212 * 2 1 4 4 C 1.34174 * 125.24445 * 180.02562 * 3 2 1 5 5 C 1.38555 * 114.71108 * 179.97438 * 4 3 2 6 6 C 1.33244 * 114.98889 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.11867 * 179.97438 * 6 5 4 8 8 N 1.46911 * 109.46831 * 89.99978 * 7 6 5 9 9 C 1.46902 * 110.99614 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47149 * 324.99463 * 9 8 7 11 11 C 1.52997 * 109.47094 * 85.00357 * 9 8 7 12 12 C 1.50706 * 109.46577 * 205.00147 * 9 8 7 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48510 * 109.47116 * 210.00055 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 S 1.75853 * 109.75640 * 0.24259 * 6 5 4 21 21 H 1.09004 * 109.46958 * 300.00196 * 1 2 3 22 22 H 1.08995 * 109.47069 * 60.00251 * 1 2 3 23 23 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 24 24 H 1.07992 * 122.64509 * 359.97438 * 4 3 2 25 25 H 1.07993 * 122.50371 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47347 * 330.00430 * 7 6 5 27 27 H 1.09000 * 109.47418 * 209.99738 * 7 6 5 28 28 H 1.00896 * 110.99617 * 303.95659 * 8 7 6 29 29 H 1.09002 * 109.47153 * 299.99508 * 11 9 8 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 31 31 H 1.09004 * 109.47261 * 59.99681 * 11 9 8 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4523 2.2247 -0.0005 5 6 3.5120 3.6089 -0.0009 6 6 2.3297 4.2233 -0.0003 7 6 2.1288 5.7169 0.0000 8 7 2.0628 6.2023 -1.3850 9 6 1.8664 7.6576 -1.4240 10 1 1.2309 7.9608 -0.5920 11 6 3.2219 8.3583 -1.3124 12 6 1.2083 8.0409 -2.7244 13 1 0.9611 7.2797 -3.4495 14 6 0.9227 9.3637 -2.9887 15 7 1.2251 10.2908 -2.1064 16 14 0.1063 9.8388 -4.6003 17 1 -1.3692 9.8114 -4.4347 18 1 0.5355 11.2065 -4.9883 19 1 0.5035 8.8763 -5.6591 20 16 1.0391 3.0288 0.0080 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.3357 1.6035 -0.0005 25 1 4.4469 4.1495 -0.0018 26 1 2.9627 6.1956 0.5134 27 1 1.1985 5.9583 0.5143 28 1 2.8870 5.9342 -1.9017 29 1 3.6979 8.0810 -0.3718 30 1 3.0762 9.4381 -1.3417 31 1 3.8574 8.0550 -2.1445 32 1 1.0246 11.2213 -2.2926 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308729360.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:35 Heat of formation + Delta-G solvation = 27.794937 kcal Electronic energy + Delta-G solvation = -14289.336119 eV Core-core repulsion = 11888.591933 eV Total energy + Delta-G solvation = -2400.744186 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.87080 -35.87832 -32.77783 -30.50808 -29.28391 -27.75218 -25.25034 -24.81271 -22.46157 -20.26991 -19.56623 -17.59705 -16.20802 -16.05180 -15.06638 -14.79357 -14.43568 -14.05449 -13.73671 -13.54061 -13.28722 -12.73259 -12.51825 -12.31565 -12.05939 -11.69855 -11.36594 -11.00238 -10.93418 -10.68446 -10.53272 -10.33058 -10.16495 -9.97991 -9.44436 -9.05011 -8.38084 -8.35520 -7.43109 -7.25452 -6.00420 -4.03838 1.00822 1.28358 1.43286 2.12411 2.45099 2.81754 3.32272 3.38380 3.42960 4.43183 4.83501 4.85729 5.03039 5.31288 5.43881 5.46698 5.47697 5.53949 5.86789 6.06103 6.18680 6.33528 6.58912 6.65744 6.80617 7.04281 7.29078 7.70849 7.85119 8.22259 8.47193 8.55672 9.03287 9.61607 11.06593 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035629 B = 0.004261 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.683288 B = 6569.914814 C = 7046.718994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.068 6.068 3 C -0.221 4.221 4 C -0.104 4.104 5 C -0.140 4.140 6 C -0.139 4.139 7 C 0.123 3.877 8 N -0.678 5.678 9 C 0.211 3.789 10 H 0.034 0.966 11 C -0.170 4.170 12 C -0.495 4.495 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 S 0.131 5.869 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.110 0.890 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.329 0.671 29 H 0.005 0.995 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -16.995 6.094 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.168 5.832 3 C -0.449 4.449 4 C -0.141 4.141 5 C -0.171 4.171 6 C -0.260 4.260 7 C -0.008 4.008 8 N -0.308 5.308 9 C 0.103 3.897 10 H 0.052 0.948 11 C -0.229 4.229 12 C -0.534 4.534 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.199 1.199 20 S 0.392 5.608 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.129 0.871 24 H 0.156 0.844 25 H 0.158 0.842 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.146 0.854 29 H 0.024 0.976 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.218 -17.865 6.059 18.866 hybrid contribution 1.227 1.777 -0.606 2.242 sum 1.009 -16.088 5.453 17.017 Atomic orbital electron populations 1.23719 0.94941 1.07204 1.06325 1.85032 1.05953 0.98844 1.93361 1.26005 1.01004 1.00743 1.17175 1.19807 0.95793 0.94679 1.03857 1.20014 0.98327 0.93247 1.05557 1.24655 0.95029 0.99916 1.06365 1.20438 1.00946 0.85706 0.93715 1.60898 1.44041 1.17227 1.08649 1.19218 0.92673 0.79866 0.97920 0.94776 1.22440 0.98487 1.05997 0.95967 1.21139 1.37859 0.92140 1.02242 0.91899 1.24946 0.96029 0.96470 0.97053 1.69878 1.48184 1.00813 1.34888 0.86495 0.79592 0.77549 0.83733 1.20750 1.21388 1.19905 1.84256 1.08977 0.94189 1.73374 0.89612 0.89409 0.87123 0.84446 0.84178 0.93944 0.90643 0.85406 0.97582 0.89131 0.95230 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.84 101.05 0.99 -0.31 16 2 S -0.07 -0.77 22.72 -107.50 -2.44 -3.21 16 3 C -0.22 -2.98 6.69 29.30 0.20 -2.79 16 4 C -0.10 -1.39 10.13 -40.90 -0.41 -1.80 16 5 C -0.14 -1.99 10.04 -41.21 -0.41 -2.40 16 6 C -0.14 -2.19 6.01 -36.05 -0.22 -2.41 16 7 C 0.12 2.20 5.97 -4.97 -0.03 2.17 16 8 N -0.68 -14.33 6.22 -109.21 -0.68 -15.01 16 9 C 0.21 5.24 2.57 -68.86 -0.18 5.06 16 10 H 0.03 0.93 7.80 -51.93 -0.40 0.52 16 11 C -0.17 -4.02 8.94 37.16 0.33 -3.68 16 12 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 13 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 15 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 16 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 S 0.13 1.89 22.30 -107.50 -2.40 -0.51 16 21 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 22 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 25 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.04 0.74 7.44 -51.93 -0.39 0.35 16 27 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 28 H 0.33 6.71 8.47 -39.29 -0.33 6.37 16 29 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -28.58 297.83 -9.88 -38.46 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.32 Total: 2.92 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.13 Total: -18.69 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: -0.05 Total: -39.93 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -4.84 Total: -3.71 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.58 -9.88 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308729360.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.252 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds