Wall clock time and date at job start Mon Mar 30 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76194 * 103.00212 * 2 1 4 4 C 1.34174 * 125.24445 * 180.02562 * 3 2 1 5 5 C 1.38555 * 114.71108 * 179.97438 * 4 3 2 6 6 C 1.33244 * 114.98889 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.11867 * 179.97438 * 6 5 4 8 8 N 1.46911 * 109.46831 * 89.99978 * 7 6 5 9 9 C 1.46902 * 110.99614 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47149 * 324.99463 * 9 8 7 11 11 C 1.52997 * 109.47094 * 85.00357 * 9 8 7 12 12 C 1.50706 * 109.46577 * 205.00147 * 9 8 7 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48510 * 109.47116 * 210.00055 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 S 1.75853 * 109.75640 * 0.24259 * 6 5 4 21 21 H 1.09004 * 109.46958 * 300.00196 * 1 2 3 22 22 H 1.08995 * 109.47069 * 60.00251 * 1 2 3 23 23 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 24 24 H 1.07992 * 122.64509 * 359.97438 * 4 3 2 25 25 H 1.07993 * 122.50371 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47347 * 330.00430 * 7 6 5 27 27 H 1.09000 * 109.47418 * 209.99738 * 7 6 5 28 28 H 1.00896 * 110.99617 * 303.95659 * 8 7 6 29 29 H 1.09002 * 109.47153 * 299.99508 * 11 9 8 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 31 31 H 1.09004 * 109.47261 * 59.99681 * 11 9 8 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4523 2.2247 -0.0005 5 6 3.5120 3.6089 -0.0009 6 6 2.3297 4.2233 -0.0003 7 6 2.1288 5.7169 0.0000 8 7 2.0628 6.2023 -1.3850 9 6 1.8664 7.6576 -1.4240 10 1 1.2309 7.9608 -0.5920 11 6 3.2219 8.3583 -1.3124 12 6 1.2083 8.0409 -2.7244 13 1 0.9611 7.2797 -3.4495 14 6 0.9227 9.3637 -2.9887 15 7 1.2251 10.2908 -2.1064 16 14 0.1063 9.8388 -4.6003 17 1 -1.3692 9.8114 -4.4347 18 1 0.5355 11.2065 -4.9883 19 1 0.5035 8.8763 -5.6591 20 16 1.0391 3.0288 0.0080 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.3357 1.6035 -0.0005 25 1 4.4469 4.1495 -0.0018 26 1 2.9627 6.1956 0.5134 27 1 1.1985 5.9583 0.5143 28 1 2.8870 5.9342 -1.9017 29 1 3.6979 8.0810 -0.3718 30 1 3.0762 9.4381 -1.3417 31 1 3.8574 8.0550 -2.1445 32 1 1.0246 11.2213 -2.2926 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308729360.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:35 Heat of formation + Delta-G solvation = 11.263255 kcal Electronic energy + Delta-G solvation = -14290.052986 eV Core-core repulsion = 11888.591933 eV Total energy + Delta-G solvation = -2401.461053 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.08193 -37.54696 -34.66787 -32.08094 -30.03549 -29.25333 -27.25486 -26.24102 -23.72240 -22.18584 -20.64288 -18.96734 -18.02655 -17.10350 -16.77926 -16.23234 -15.83935 -15.30348 -14.89842 -14.80196 -14.43619 -13.94391 -13.93439 -13.66724 -13.49984 -13.07479 -12.97035 -12.80789 -12.71671 -12.31293 -12.15895 -11.98126 -11.84598 -11.25827 -11.08039 -10.55262 -10.49015 -9.46500 -9.03669 -8.31711 -8.09653 -6.21491 -0.11095 0.35679 0.40521 1.02264 1.43150 1.43734 1.54557 1.55867 1.72608 2.44169 3.18186 3.64500 3.98644 4.18207 4.23795 4.26551 4.43373 4.59539 4.67521 4.76515 4.80189 4.88389 5.05583 5.08113 5.23101 5.37636 5.50357 5.69031 5.80117 6.25025 6.59859 6.75645 6.92171 7.48408 8.95082 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035629 B = 0.004261 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.683288 B = 6569.914814 C = 7046.718994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.066 6.066 3 C -0.217 4.217 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.170 4.170 7 C 0.131 3.869 8 N -0.682 5.682 9 C 0.215 3.785 10 H 0.005 0.995 11 C -0.156 4.156 12 C -0.516 4.516 13 H 0.053 0.947 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.960 3.040 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.270 1.270 20 S 0.121 5.879 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.138 0.862 24 H 0.159 0.841 25 H 0.155 0.845 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.334 0.666 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -18.590 5.780 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.171 5.829 3 C -0.446 4.446 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.291 4.291 7 C 0.001 3.999 8 N -0.312 5.312 9 C 0.107 3.893 10 H 0.023 0.977 11 C -0.216 4.216 12 C -0.554 4.554 13 H 0.071 0.929 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.786 3.214 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.195 1.195 20 S 0.382 5.618 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.156 0.844 24 H 0.177 0.823 25 H 0.173 0.827 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.151 0.849 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.010 -19.483 5.752 20.314 hybrid contribution 1.145 2.132 -0.458 2.463 sum 1.134 -17.351 5.295 18.176 Atomic orbital electron populations 1.23854 0.92708 1.09040 1.06383 1.85044 1.08393 0.96713 1.92796 1.26355 1.00791 1.01797 1.15641 1.20046 0.96597 0.94519 1.04163 1.20251 0.98318 0.93835 1.03316 1.24403 0.96184 0.98828 1.09706 1.20279 1.00617 0.87423 0.91614 1.60730 1.44586 1.14863 1.11064 1.18974 0.92505 0.82199 0.95634 0.97732 1.22238 0.98118 1.03915 0.97318 1.21425 1.38539 0.92288 1.03178 0.92891 1.25688 0.96509 0.96436 1.00140 1.69999 1.48770 1.01025 1.36396 0.85532 0.78605 0.77320 0.79990 1.20374 1.20799 1.19462 1.84208 1.09270 0.94624 1.73721 0.89258 0.89643 0.84386 0.82342 0.82739 0.93330 0.91821 0.84850 0.95299 0.91858 0.94844 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.84 113.37 1.12 -1.10 16 2 S -0.07 -1.34 22.72 -56.49 -1.28 -2.62 16 3 C -0.22 -5.49 6.69 66.89 0.45 -5.04 16 4 C -0.12 -2.86 10.13 21.42 0.22 -2.64 16 5 C -0.12 -3.35 10.04 21.22 0.21 -3.14 16 6 C -0.17 -5.26 6.01 24.56 0.15 -5.11 16 7 C 0.13 4.69 5.97 85.56 0.51 5.20 16 8 N -0.68 -28.93 6.22 -499.43 -3.11 -32.04 16 9 C 0.22 10.86 2.57 44.17 0.11 10.97 16 10 H 0.00 0.26 7.80 -2.39 -0.02 0.25 16 11 C -0.16 -7.42 8.94 71.98 0.64 -6.77 16 12 C -0.52 -28.78 8.84 25.60 0.23 -28.55 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.01 0.58 5.30 84.66 0.45 1.03 16 15 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 16 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 S 0.12 3.40 22.30 -56.49 -1.26 2.14 16 21 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 25 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 26 H 0.05 1.66 7.44 -2.39 -0.02 1.64 16 27 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 28 H 0.33 13.48 8.47 -89.70 -0.76 12.72 16 29 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 30 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 31 H 0.03 1.51 8.13 -2.38 -0.02 1.49 16 32 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -60.48 297.83 1.06 -59.42 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.36 Total: 14.89 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.08 Total: -35.16 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.86 Total: -84.78 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.54 Total: -0.49 kcal Total: -60.48 1.06 -59.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308729360.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.685 kcal (2) G-P(sol) polarization free energy of solvation -60.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds