Wall clock time and date at job start Mon Mar 30 2020 06:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47569 * 2 1 4 4 N 1.46502 * 109.47282 * 120.00691 * 2 1 3 5 5 C 1.36905 * 119.99366 * 307.36681 * 4 2 1 6 6 H 1.08005 * 120.00325 * 317.31699 * 5 4 2 7 7 C 1.38990 * 119.99905 * 137.32587 * 5 4 2 8 8 N 1.31415 * 119.99619 * 339.41213 * 7 5 4 9 9 Si 1.86793 * 119.99979 * 159.42083 * 7 5 4 10 10 H 1.48500 * 109.47709 * 59.99722 * 9 7 5 11 11 H 1.48507 * 109.47207 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47295 * 299.99335 * 9 7 5 13 13 C 1.34769 * 119.99915 * 127.36576 * 4 2 1 14 14 O 1.21786 * 119.99510 * 192.23409 * 13 4 2 15 15 C 1.46173 * 120.00622 * 12.50708 * 13 4 2 16 16 S 1.75829 * 125.46617 * 46.05770 * 15 13 4 17 17 C 1.70593 * 91.60903 * 180.02562 * 16 15 13 18 18 C 1.33769 * 111.05869 * 0.02562 * 17 16 15 19 19 C 1.37048 * 125.47348 * 225.74949 * 15 13 4 20 20 F 1.35098 * 123.41145 * 0.02562 * 19 15 13 21 21 H 1.09003 * 109.47100 * 305.26633 * 1 2 3 22 22 H 1.08997 * 109.47197 * 65.26216 * 1 2 3 23 23 H 1.08993 * 109.47474 * 185.26748 * 1 2 3 24 24 H 1.09010 * 109.46731 * 240.00157 * 2 1 3 25 25 H 1.09003 * 109.47443 * 173.10803 * 3 2 1 26 26 H 1.09001 * 109.47352 * 293.10793 * 3 2 1 27 27 H 1.08997 * 109.47049 * 53.10725 * 3 2 1 28 28 H 0.97003 * 119.99670 * 179.97438 * 8 7 5 29 29 H 1.08007 * 124.46978 * 179.97438 * 17 16 15 30 30 H 1.07998 * 122.44937 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.5680 -0.3174 2.4339 6 1 1.4703 0.7298 2.6798 7 6 1.2368 -1.2859 3.3741 8 7 0.9618 -2.5111 2.9865 9 14 1.1821 -0.8459 5.1887 10 1 0.1778 0.2257 5.4083 11 1 0.8053 -2.0461 5.9780 12 1 2.5193 -0.3674 5.6225 13 6 2.9108 -1.6937 1.0778 14 8 3.1492 -2.4122 2.0318 15 6 3.5970 -1.9154 -0.1936 16 16 4.3404 -0.6664 -1.1831 17 6 4.8294 -1.8128 -2.3479 18 6 4.4487 -3.0464 -1.9976 19 6 3.7696 -3.1308 -0.8029 20 9 3.3138 -4.2931 -0.2867 21 1 -0.3633 0.5934 0.8391 22 1 -0.3633 0.4300 -0.9333 23 1 -0.3634 -1.0232 0.0943 24 1 1.8933 -0.5139 -0.8901 25 1 3.1231 1.4449 0.1233 26 1 1.7810 1.9195 -0.9452 27 1 1.5796 1.9906 0.8219 28 1 0.7310 -3.1871 3.6427 29 1 5.3737 -1.5740 -3.2497 30 1 4.6639 -3.9135 -2.6044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308883889.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:54 Heat of formation + Delta-G solvation = -50.345632 kcal Electronic energy + Delta-G solvation = -17663.821293 eV Core-core repulsion = 14693.475502 eV Total energy + Delta-G solvation = -2970.345791 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.83951 -40.41369 -38.18546 -36.91833 -34.36689 -31.90152 -30.66252 -27.89542 -27.18668 -25.41132 -22.87716 -21.87124 -20.49532 -19.65880 -18.00064 -17.62548 -16.92764 -16.72533 -16.53102 -15.81851 -15.41601 -15.25416 -14.81697 -14.73729 -14.32111 -13.88836 -13.51539 -13.34338 -13.00271 -12.91519 -12.68953 -12.60941 -12.56561 -12.14720 -12.11025 -11.82826 -11.64405 -10.83558 -10.24280 -9.67325 -9.33896 -9.13641 -8.15342 -5.95700 -0.37405 0.40143 0.95553 1.36040 1.37642 1.45960 1.49387 2.29192 2.53978 3.12573 3.24999 3.47886 4.03181 4.11943 4.14864 4.42595 4.49554 4.56052 4.79275 4.90996 4.95983 5.03594 5.10190 5.16358 5.37670 5.45874 5.52593 5.58462 6.21282 6.99469 7.18820 7.63938 8.28331 8.89961 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.009344 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.572335 B = 2995.842029 C = 3606.914885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.108 3.892 3 C -0.146 4.146 4 N -0.445 5.445 5 C -0.352 4.352 6 H 0.094 0.906 7 C 0.013 3.987 8 N -0.854 5.854 9 Si 0.968 3.032 10 H -0.251 1.251 11 H -0.294 1.294 12 H -0.279 1.279 13 C 0.508 3.492 14 O -0.572 6.572 15 C -0.313 4.313 16 S 0.303 5.697 17 C -0.211 4.211 18 C -0.179 4.179 19 C 0.089 3.911 20 F -0.144 7.144 21 H 0.053 0.947 22 H 0.088 0.912 23 H 0.018 0.982 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.254 0.746 29 H 0.225 0.775 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 7.441 -14.064 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.005 3.995 3 C -0.204 4.204 4 N -0.166 5.166 5 C -0.480 4.480 6 H 0.111 0.889 7 C -0.194 4.194 8 N -0.489 5.489 9 Si 0.792 3.208 10 H -0.176 1.176 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.295 3.705 14 O -0.454 6.454 15 C -0.435 4.435 16 S 0.569 5.431 17 C -0.348 4.348 18 C -0.210 4.210 19 C 0.055 3.945 20 F -0.123 7.123 21 H 0.072 0.928 22 H 0.107 0.893 23 H 0.038 0.962 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.242 0.758 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.527 8.443 -13.402 16.776 hybrid contribution -0.543 -2.536 1.342 2.920 sum 4.983 5.908 -12.059 14.323 Atomic orbital electron populations 1.21841 0.94805 1.00301 1.02180 1.21533 0.95299 0.94760 0.87953 1.22094 1.00617 0.94465 1.03237 1.43464 1.35503 1.31472 1.06131 1.19206 1.46407 0.92933 0.89425 0.88859 1.26154 0.94391 0.95077 1.03809 1.70096 1.39452 1.03870 1.35462 0.85417 0.78593 0.77567 0.79176 1.17554 1.22045 1.20512 1.17256 0.82324 0.84793 0.86093 1.90669 1.66445 1.47065 1.41249 1.25172 1.14783 0.99377 1.04125 1.82728 1.46311 1.05521 1.08582 1.25630 1.06287 0.96253 1.06614 1.19878 1.03894 1.01494 0.95713 1.17697 1.00987 0.80539 0.95268 1.91437 1.87313 1.46403 1.87134 0.92826 0.89297 0.96228 0.90553 0.92930 0.88585 0.92817 0.93657 0.75825 0.80591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.94 71.98 0.64 -4.35 16 2 C 0.11 4.17 2.50 44.99 0.11 4.29 16 3 C -0.15 -4.35 8.82 71.98 0.63 -3.71 16 4 N -0.44 -22.85 2.44 -618.11 -1.51 -24.36 16 5 C -0.35 -19.50 7.93 84.08 0.67 -18.84 16 6 H 0.09 4.81 7.39 -2.91 -0.02 4.79 16 7 C 0.01 0.77 4.35 84.94 0.37 1.14 16 8 N -0.85 -55.03 11.34 21.67 0.25 -54.78 16 9 Si 0.97 46.71 29.60 68.60 2.03 48.74 16 10 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 C 0.51 28.26 6.92 86.30 0.60 28.85 16 14 O -0.57 -38.12 14.17 -4.62 -0.07 -38.18 16 15 C -0.31 -13.58 4.97 24.05 0.12 -13.46 16 16 S 0.30 8.25 19.78 -56.49 -1.12 7.14 16 17 C -0.21 -4.39 10.91 66.80 0.73 -3.66 16 18 C -0.18 -4.95 10.15 21.12 0.21 -4.74 16 19 C 0.09 3.67 7.49 21.86 0.16 3.83 16 20 F -0.14 -7.03 17.23 44.97 0.77 -6.26 16 21 H 0.05 2.09 7.71 -2.39 -0.02 2.07 16 22 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 2.75 5.38 -2.38 -0.01 2.74 16 25 H 0.05 1.54 7.23 -2.39 -0.02 1.52 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 1.69 7.59 -2.39 -0.02 1.67 16 28 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 29 H 0.23 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -81.58 273.03 5.77 -75.81 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.16 Total: 2.55 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.25 Total: -10.66 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -1.26 Total: -79.15 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.07 Total: -38.18 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.77 Total: -6.26 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 8.25 SS G_CDS: -1.12 Total: 7.14 kcal Total: -81.58 5.77 -75.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308883889.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.469 kcal (2) G-P(sol) polarization free energy of solvation -81.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds