Wall clock time and date at job start Mon Mar 30 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21731 * 119.99956 * 0.02562 * 14 13 3 16 16 C 1.46294 * 120.00089 * 179.97438 * 14 13 3 17 17 S 1.75822 * 125.46612 * 0.02901 * 16 14 13 18 18 C 1.70594 * 91.60943 * 180.02562 * 17 16 14 19 19 C 1.33729 * 111.03872 * 359.97438 * 18 17 16 20 20 C 1.36922 * 125.46476 * 179.72164 * 16 14 13 21 21 F 1.35103 * 123.40519 * 0.02562 * 20 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 28 28 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 29 29 H 1.07999 * 124.47744 * 179.97438 * 18 17 16 30 30 H 1.08004 * 122.45388 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3425 2.6318 0.4310 16 6 0.0479 3.3178 2.6173 17 16 1.0528 3.4480 4.0542 18 6 -0.1686 4.2963 4.8902 19 6 -1.2509 4.4605 4.1220 20 6 -1.1530 3.9314 2.8542 21 9 -2.1437 4.0058 1.9386 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8292 -0.0609 -2.9500 28 1 2.2719 2.1231 1.9979 29 1 -0.0795 4.6534 5.9055 30 1 -2.1352 4.9745 4.4688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308972286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:37 Heat of formation + Delta-G solvation = -54.570206 kcal Electronic energy + Delta-G solvation = -16920.743544 eV Core-core repulsion = 13950.214562 eV Total energy + Delta-G solvation = -2970.528983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.64839 -39.08123 -37.25432 -35.02677 -32.45533 -31.16247 -29.50846 -26.99889 -24.82988 -23.09238 -21.40941 -19.61893 -19.49032 -18.56148 -16.97743 -16.15599 -15.70393 -15.43702 -15.03984 -14.52159 -14.40509 -14.19286 -13.75485 -13.09117 -12.69864 -12.59761 -12.05689 -11.81259 -11.52109 -11.25230 -11.15640 -10.99636 -10.83319 -10.34790 -10.19471 -9.64810 -9.25045 -9.07202 -8.92626 -8.51732 -8.49530 -7.88311 -6.13453 -4.23422 0.43826 1.32898 1.73996 2.20262 3.25104 3.30585 3.31452 3.74585 3.92689 4.30441 4.38039 4.91009 5.16044 5.18197 5.31113 5.60827 5.86213 6.30136 6.39810 6.46690 6.66137 7.04066 7.18729 7.32638 7.39266 7.59568 7.69522 7.87369 8.15476 8.56633 8.73403 9.01578 9.43414 10.91937 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.006104 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.957943 B = 4585.866998 C = 5192.727190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.572 3.428 15 O -0.526 6.526 16 C -0.293 4.293 17 S 0.251 5.749 18 C -0.225 4.225 19 C -0.175 4.175 20 C 0.144 3.856 21 F -0.106 7.106 22 H 0.037 0.963 23 H 0.024 0.976 24 H 0.050 0.950 25 H 0.032 0.968 26 H 0.101 0.899 27 H 0.266 0.734 28 H 0.385 0.615 29 H 0.176 0.824 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 5.698 14.272 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.356 3.644 15 O -0.405 6.405 16 C -0.415 4.415 17 S 0.517 5.483 18 C -0.363 4.363 19 C -0.208 4.208 20 C 0.110 3.890 21 F -0.084 7.084 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.218 0.782 29 H 0.193 0.807 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.471 5.076 13.713 15.028 hybrid contribution -0.447 0.567 -0.106 0.729 sum -3.917 5.642 13.607 15.243 Atomic orbital electron populations 1.21853 0.98293 0.98176 1.01293 1.21945 0.92655 0.99610 1.02425 1.18866 0.94399 0.89264 0.80495 0.92985 1.21168 0.90500 1.39371 1.06451 0.92070 1.24877 0.98671 0.94719 0.95303 1.69880 1.35285 1.37369 1.09309 0.86501 0.84736 0.78339 0.77485 1.20115 1.21098 1.20158 1.46418 1.13780 1.55759 1.18775 1.16685 0.83406 0.79309 0.84997 1.90855 1.51352 1.59680 1.38602 1.25189 1.00055 1.14013 1.02284 1.83163 1.14640 1.49484 1.01026 1.25037 0.98842 1.06842 1.05576 1.19807 1.01787 1.06420 0.92758 1.16887 0.85476 0.99130 0.87528 1.91565 1.58270 1.93882 1.64726 0.94378 0.95695 0.93043 0.94919 0.88094 0.92430 0.78241 0.80663 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.87 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.70 -14.91 5.02 -56.37 -0.28 -15.20 16 14 C 0.57 12.14 6.34 -13.02 -0.08 12.06 16 15 O -0.53 -13.04 13.26 5.16 0.07 -12.97 16 16 C -0.29 -4.93 6.45 -36.82 -0.24 -5.17 16 17 S 0.25 2.90 22.14 -107.50 -2.38 0.52 16 18 C -0.23 -2.14 10.91 29.15 0.32 -1.82 16 19 C -0.18 -2.00 10.15 -41.35 -0.42 -2.42 16 20 C 0.14 2.27 7.48 -40.25 -0.30 1.97 16 21 F -0.11 -1.92 16.42 2.25 0.04 -1.88 16 22 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.39 7.13 7.64 -40.82 -0.31 6.82 16 29 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 273.66 15.07 4.12 4.12 Total: -1.00 -30.57 273.66 -6.88 -37.45 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.95 Total: 3.99 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.10 Total: -7.48 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.34 Total: -39.13 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.38 Total: 0.52 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.57 -6.88 -37.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308972286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.120 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds