Wall clock time and date at job start Mon Mar 30 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21731 * 119.99956 * 0.02562 * 14 13 3 16 16 C 1.46294 * 120.00089 * 179.97438 * 14 13 3 17 17 S 1.75822 * 125.46612 * 0.02901 * 16 14 13 18 18 C 1.70594 * 91.60943 * 180.02562 * 17 16 14 19 19 C 1.33729 * 111.03872 * 359.97438 * 18 17 16 20 20 C 1.36922 * 125.46476 * 179.72164 * 16 14 13 21 21 F 1.35103 * 123.40519 * 0.02562 * 20 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 28 28 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 29 29 H 1.07999 * 124.47744 * 179.97438 * 18 17 16 30 30 H 1.08004 * 122.45388 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3425 2.6318 0.4310 16 6 0.0479 3.3178 2.6173 17 16 1.0528 3.4480 4.0542 18 6 -0.1686 4.2963 4.8902 19 6 -1.2509 4.4605 4.1220 20 6 -1.1530 3.9314 2.8542 21 9 -2.1437 4.0058 1.9386 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8292 -0.0609 -2.9500 28 1 2.2719 2.1231 1.9979 29 1 -0.0795 4.6534 5.9055 30 1 -2.1352 4.9745 4.4688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308972286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:36 Heat of formation + Delta-G solvation = -75.129243 kcal Electronic energy + Delta-G solvation = -16921.635051 eV Core-core repulsion = 13950.214562 eV Total energy + Delta-G solvation = -2971.420489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.94034 -40.74768 -38.34133 -36.90719 -34.37756 -33.02506 -30.79129 -28.89128 -26.04420 -24.93596 -22.93327 -21.41641 -20.80300 -19.98641 -18.43475 -17.77585 -17.17701 -16.96010 -16.72226 -16.14059 -15.86088 -15.42044 -14.96030 -14.61806 -14.60815 -14.06715 -13.62198 -13.32546 -13.20194 -13.00980 -12.82912 -12.65449 -12.21551 -12.08864 -12.08601 -11.62640 -11.10851 -10.96757 -10.54354 -10.06099 -9.67792 -9.47679 -8.16592 -6.34976 -0.64833 0.31257 0.80569 1.20102 1.46001 1.48266 1.56074 2.16684 2.30600 2.53259 3.12887 3.29778 3.83205 4.00740 4.41059 4.45055 4.52648 4.69533 4.75363 4.87372 5.02880 5.21348 5.25000 5.39364 5.48128 5.56879 5.74433 5.86577 6.12616 6.70367 6.82991 7.27959 7.43759 8.88998 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.006104 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.957943 B = 4585.866998 C = 5192.727190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.551 4.551 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.697 5.697 14 C 0.570 3.430 15 O -0.577 6.577 16 C -0.354 4.354 17 S 0.305 5.695 18 C -0.184 4.184 19 C -0.187 4.187 20 C 0.136 3.864 21 F -0.129 7.129 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.266 0.734 28 H 0.400 0.600 29 H 0.227 0.773 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 6.469 17.779 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.589 4.589 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.345 5.345 14 C 0.357 3.643 15 O -0.460 6.460 16 C -0.475 4.475 17 S 0.571 5.429 18 C -0.322 4.322 19 C -0.217 4.217 20 C 0.100 3.900 21 F -0.108 7.108 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.244 0.756 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.283 5.856 17.270 18.378 hybrid contribution -0.848 0.396 -1.086 1.434 sum -3.132 6.252 16.184 17.630 Atomic orbital electron populations 1.21687 0.97271 0.99236 1.00001 1.21793 0.93469 0.98987 1.01653 1.18466 0.94088 0.89239 0.80699 0.98309 1.21513 0.90968 1.39418 1.07026 0.90794 1.25795 1.03566 0.94179 0.94836 1.70042 1.37309 1.38108 1.09840 0.85385 0.78716 0.78502 0.77667 1.18620 1.21201 1.19633 1.46125 1.14550 1.55922 1.17945 1.17234 0.82437 0.78459 0.86187 1.90811 1.52554 1.61523 1.41080 1.24844 1.02536 1.17050 1.03083 1.82953 1.13561 1.48655 0.97682 1.25689 0.96607 1.03073 1.06815 1.19984 1.03838 1.07108 0.90819 1.17590 0.84612 0.99076 0.88727 1.91497 1.59241 1.94026 1.66040 0.94378 0.93227 0.95643 0.93692 0.90557 0.92488 0.76518 0.75618 0.79927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.51 71.98 0.61 -5.31 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.91 16 3 C 0.28 14.69 2.24 44.24 0.10 14.79 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.92 -52.60 11.29 21.45 0.24 -52.35 16 9 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 N -0.70 -30.46 5.02 -450.44 -2.26 -32.72 16 14 C 0.57 25.10 6.34 86.34 0.55 25.65 16 15 O -0.58 -30.53 13.26 -4.45 -0.06 -30.59 16 16 C -0.35 -11.77 6.45 24.06 0.16 -11.61 16 17 S 0.31 6.06 22.14 -56.49 -1.25 4.81 16 18 C -0.18 -2.52 10.91 66.80 0.73 -1.80 16 19 C -0.19 -3.62 10.15 21.12 0.21 -3.40 16 20 C 0.14 4.20 7.48 21.84 0.16 4.36 16 21 F -0.13 -4.84 16.42 44.97 0.74 -4.10 16 22 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.02 1.29 7.84 -2.38 -0.02 1.28 16 25 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 4.27 5.95 -2.39 -0.01 4.25 16 27 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.40 14.71 7.64 -92.71 -0.71 14.00 16 29 H 0.23 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -71.54 273.66 3.27 -68.28 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.47 Total: 13.91 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 3.36 Total: -10.99 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.02 Total: -85.07 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.74 Total: -4.10 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.25 Total: 4.81 kcal Total: -71.54 3.27 -68.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308972286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.853 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds