Wall clock time and date at job start Mon Mar 30 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 H 1.09002 * 109.46667 * 55.00783 * 3 2 1 5 5 C 1.50699 * 109.46944 * 175.00268 * 3 2 1 6 6 H 1.08007 * 120.00264 * 120.00458 * 5 3 2 7 7 C 1.37881 * 120.00302 * 300.00080 * 5 3 2 8 8 N 1.31509 * 120.00028 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 119.99724 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47502 * 89.99967 * 9 7 5 11 11 H 1.48509 * 109.47220 * 210.00029 * 9 7 5 12 12 H 1.48501 * 109.47082 * 329.99516 * 9 7 5 13 13 N 1.46496 * 109.47554 * 295.00154 * 3 2 1 14 14 C 1.34777 * 119.99613 * 84.99645 * 13 3 2 15 15 O 1.21735 * 120.00460 * 0.02562 * 14 13 3 16 16 C 1.46296 * 120.00111 * 179.97438 * 14 13 3 17 17 S 1.75822 * 125.46197 * 0.03214 * 16 14 13 18 18 C 1.70596 * 91.60789 * 179.97438 * 17 16 14 19 19 C 1.33733 * 111.03896 * 0.02562 * 18 17 16 20 20 C 1.36926 * 125.46634 * 179.71735 * 16 14 13 21 21 F 1.35098 * 123.40488 * 0.02591 * 20 16 14 22 22 H 1.09006 * 109.46865 * 299.99287 * 1 2 3 23 23 H 1.08997 * 109.47670 * 59.99434 * 1 2 3 24 24 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46865 * 240.00713 * 2 1 3 26 26 H 1.08997 * 109.47670 * 120.00566 * 2 1 3 27 27 H 0.97003 * 120.00120 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00516 * 265.00630 * 13 3 2 29 29 H 1.08005 * 124.48232 * 179.97438 * 18 17 16 30 30 H 1.08006 * 122.45135 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8805 1.3361 9 14 3.0965 0.1088 2.5699 10 1 2.8756 -1.3273 2.2632 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8073 2.6387 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3668 15 8 -0.3423 2.6325 -0.4304 16 6 0.0481 3.3191 -2.6165 17 16 1.0529 3.4494 -4.0534 18 6 -0.1680 4.2992 -4.8887 19 6 -1.2500 4.4637 -4.1203 20 6 -1.1569 3.9233 -2.8570 21 9 -2.1521 3.9868 -1.9455 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.8771 0.4820 2.1126 28 1 2.2717 2.1233 -1.9977 29 1 -0.0785 4.6577 -5.9036 30 1 -2.1343 4.9779 -4.4669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308972287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:40 Heat of formation + Delta-G solvation = -46.389058 kcal Electronic energy + Delta-G solvation = -17003.285786 eV Core-core repulsion = 14033.111565 eV Total energy + Delta-G solvation = -2970.174221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.73233 -39.29189 -37.35254 -35.29845 -32.47809 -31.71016 -29.66157 -27.50056 -24.93175 -22.79801 -21.76118 -19.86726 -19.67835 -18.72102 -17.03588 -16.49927 -15.82110 -15.49415 -15.42049 -14.68689 -14.49226 -14.17172 -13.85429 -13.31861 -13.02290 -12.67157 -12.30774 -12.04539 -11.88416 -11.73852 -11.20476 -11.09374 -10.92224 -10.64175 -9.94429 -9.64851 -9.33404 -9.24546 -9.00700 -8.77669 -8.55575 -8.13362 -6.22867 -4.25818 0.36288 1.26718 1.68129 2.13286 3.22948 3.35219 3.40586 3.57647 3.76771 4.25503 4.30498 4.84180 5.07823 5.10764 5.20706 5.54739 5.76645 5.95990 6.02081 6.17072 6.23055 6.64550 6.68626 6.81275 6.95027 7.19518 7.25720 7.46546 8.07662 8.44316 8.70798 8.81911 9.37343 10.89009 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032448 B = 0.006435 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.721377 B = 4349.842766 C = 4888.270774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.693 5.693 14 C 0.576 3.424 15 O -0.528 6.528 16 C -0.299 4.299 17 S 0.258 5.742 18 C -0.223 4.223 19 C -0.177 4.177 20 C 0.147 3.853 21 F -0.106 7.106 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.268 0.732 28 H 0.392 0.608 29 H 0.177 0.823 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 4.726 -13.091 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.341 5.341 14 C 0.360 3.640 15 O -0.407 6.407 16 C -0.421 4.421 17 S 0.524 5.476 18 C -0.361 4.361 19 C -0.209 4.209 20 C 0.113 3.887 21 F -0.084 7.084 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.225 0.775 29 H 0.194 0.806 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.624 4.160 -12.624 15.844 hybrid contribution -1.778 0.099 0.746 1.931 sum -10.401 4.259 -11.878 16.353 Atomic orbital electron populations 1.21888 0.96876 0.99174 1.02324 1.22296 0.94415 0.99771 1.01269 1.19224 0.95849 0.88581 0.82339 0.92986 1.21019 0.88396 1.40042 1.08002 0.90106 1.24813 0.94877 0.95071 0.97611 1.69860 1.08666 1.44351 1.29844 0.86918 0.81034 0.80002 0.80913 1.20160 1.22086 1.18384 1.46061 1.14029 1.55766 1.18220 1.16687 0.83126 0.79043 0.85139 1.90851 1.51443 1.59753 1.38652 1.25055 1.00060 1.14678 1.02272 1.83251 1.14410 1.49226 1.00668 1.25077 0.98842 1.06525 1.05610 1.19805 1.01859 1.06395 0.92849 1.16881 0.85215 0.98950 0.87626 1.91564 1.57945 1.93927 1.65004 0.92758 0.93030 0.94806 0.92165 0.92575 0.92227 0.77467 0.80557 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.51 37.15 0.32 -2.68 16 2 C -0.14 -3.11 5.11 -26.73 -0.14 -3.24 16 3 C 0.24 5.81 1.83 -69.08 -0.13 5.68 16 4 H 0.05 1.37 6.63 -51.93 -0.34 1.03 16 5 C -0.54 -14.42 9.31 -34.44 -0.32 -14.74 16 6 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 9 Si 0.88 21.69 24.41 -169.99 -4.15 17.54 16 10 H -0.27 -6.54 6.83 56.52 0.39 -6.15 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 13 N -0.69 -14.11 5.02 -56.36 -0.28 -14.39 16 14 C 0.58 11.55 6.34 -13.02 -0.08 11.46 16 15 O -0.53 -12.29 13.27 5.16 0.07 -12.23 16 16 C -0.30 -4.76 6.45 -36.82 -0.24 -5.00 16 17 S 0.26 2.86 22.14 -107.50 -2.38 0.48 16 18 C -0.22 -2.00 10.91 29.15 0.32 -1.69 16 19 C -0.18 -1.91 10.15 -41.35 -0.42 -2.33 16 20 C 0.15 2.21 7.48 -40.25 -0.30 1.91 16 21 F -0.11 -1.82 16.42 2.25 0.04 -1.79 16 22 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 23 H 0.05 1.06 5.64 -51.93 -0.29 0.77 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.06 1.31 3.21 -51.93 -0.17 1.14 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.39 7.04 7.64 -40.82 -0.31 6.73 16 29 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 30 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 266.90 15.07 4.02 4.02 Total: -1.00 -31.58 266.90 -5.82 -37.40 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.82 Total: 2.85 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.09 Total: -8.49 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.49 Total: -39.79 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.23 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.15 Total: 17.54 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.38 Total: 0.48 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.58 -5.82 -37.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308972287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.994 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds