Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 H 1.09002 * 109.46667 * 55.00783 * 3 2 1 5 5 C 1.50699 * 109.46944 * 175.00268 * 3 2 1 6 6 H 1.08007 * 120.00264 * 120.00458 * 5 3 2 7 7 C 1.37881 * 120.00302 * 300.00080 * 5 3 2 8 8 N 1.31509 * 120.00028 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 119.99724 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47502 * 89.99967 * 9 7 5 11 11 H 1.48509 * 109.47220 * 210.00029 * 9 7 5 12 12 H 1.48501 * 109.47082 * 329.99516 * 9 7 5 13 13 N 1.46496 * 109.47554 * 295.00154 * 3 2 1 14 14 C 1.34777 * 119.99613 * 84.99645 * 13 3 2 15 15 O 1.21735 * 120.00460 * 0.02562 * 14 13 3 16 16 C 1.46296 * 120.00111 * 179.97438 * 14 13 3 17 17 S 1.75822 * 125.46197 * 0.03214 * 16 14 13 18 18 C 1.70596 * 91.60789 * 179.97438 * 17 16 14 19 19 C 1.33733 * 111.03896 * 0.02562 * 18 17 16 20 20 C 1.36926 * 125.46634 * 179.71735 * 16 14 13 21 21 F 1.35098 * 123.40488 * 0.02591 * 20 16 14 22 22 H 1.09006 * 109.46865 * 299.99287 * 1 2 3 23 23 H 1.08997 * 109.47670 * 59.99434 * 1 2 3 24 24 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46865 * 240.00713 * 2 1 3 26 26 H 1.08997 * 109.47670 * 120.00566 * 2 1 3 27 27 H 0.97003 * 120.00120 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00516 * 265.00630 * 13 3 2 29 29 H 1.08005 * 124.48232 * 179.97438 * 18 17 16 30 30 H 1.08006 * 122.45135 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8805 1.3361 9 14 3.0965 0.1088 2.5699 10 1 2.8756 -1.3273 2.2632 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8073 2.6387 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3668 15 8 -0.3423 2.6325 -0.4304 16 6 0.0481 3.3191 -2.6165 17 16 1.0529 3.4494 -4.0534 18 6 -0.1680 4.2992 -4.8887 19 6 -1.2500 4.4637 -4.1203 20 6 -1.1569 3.9233 -2.8570 21 9 -2.1521 3.9868 -1.9455 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 5.8771 0.4820 2.1126 28 1 2.2717 2.1233 -1.9977 29 1 -0.0785 4.6577 -5.9036 30 1 -2.1343 4.9779 -4.4669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308972287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = -68.927588 kcal Electronic energy + Delta-G solvation = -17004.263130 eV Core-core repulsion = 14033.111565 eV Total energy + Delta-G solvation = -2971.151565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.95073 -40.87343 -38.38245 -37.07093 -34.46263 -33.46607 -30.85682 -29.34151 -26.05153 -24.63004 -23.20844 -21.60077 -20.83936 -20.10528 -18.58953 -18.04866 -17.30787 -16.99319 -16.90718 -16.14626 -15.92420 -15.45348 -15.10254 -14.93848 -14.62688 -14.22656 -13.88387 -13.74077 -13.40377 -13.04687 -12.86103 -12.81057 -12.44647 -12.08383 -11.88957 -11.44814 -11.28436 -11.01449 -10.87443 -10.10780 -9.79710 -9.49136 -8.39784 -6.45665 -0.66723 0.30097 0.79704 1.18573 1.25844 1.34527 1.44361 2.09752 2.24575 2.28188 2.95750 3.27939 3.76620 3.96889 4.18968 4.27613 4.37691 4.43646 4.71446 4.79338 4.88187 4.95327 5.06758 5.17943 5.24194 5.34200 5.46785 5.54814 6.09911 6.54048 6.71516 7.13819 7.29791 8.75105 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032448 B = 0.006435 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.721377 B = 4349.842766 C = 4888.270774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.034 3.966 8 N -0.929 5.929 9 Si 0.933 3.067 10 H -0.257 1.257 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.693 5.693 14 C 0.575 3.425 15 O -0.571 6.571 16 C -0.355 4.355 17 S 0.300 5.700 18 C -0.183 4.183 19 C -0.187 4.187 20 C 0.141 3.859 21 F -0.127 7.127 22 H 0.035 0.965 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.271 0.729 28 H 0.403 0.597 29 H 0.226 0.774 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 4.866 -15.553 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.041 0.959 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.166 4.166 8 N -0.568 5.568 9 Si 0.760 3.240 10 H -0.182 1.182 11 H -0.219 1.219 12 H -0.188 1.188 13 N -0.342 5.342 14 C 0.363 3.637 15 O -0.454 6.454 16 C -0.476 4.476 17 S 0.567 5.433 18 C -0.321 4.321 19 C -0.218 4.218 20 C 0.105 3.895 21 F -0.106 7.106 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.238 0.762 29 H 0.243 0.757 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.623 4.301 -15.124 18.435 hybrid contribution -1.437 0.170 1.343 1.975 sum -11.061 4.471 -13.781 18.227 Atomic orbital electron populations 1.21766 0.95458 1.00669 1.01335 1.22214 0.95613 0.98286 1.01420 1.18873 0.93670 0.89761 0.83196 0.95911 1.21224 0.89898 1.38950 1.07251 0.92224 1.25485 0.95724 0.95756 0.99645 1.69957 1.10116 1.45871 1.30862 0.86091 0.79271 0.80120 0.78530 1.18234 1.21858 1.18834 1.45850 1.14853 1.56113 1.17407 1.17152 0.82110 0.78175 0.86253 1.90810 1.52420 1.61344 1.40779 1.24752 1.02305 1.17559 1.02961 1.83129 1.13662 1.48682 0.97861 1.25692 0.96647 1.02953 1.06799 1.19995 1.03786 1.06935 0.91041 1.17529 0.84367 0.98867 0.88742 1.91502 1.58824 1.94054 1.66195 0.94543 0.93317 0.91898 0.90896 0.93385 0.91953 0.76202 0.75747 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.14 -6.05 5.11 30.59 0.16 -5.90 16 3 C 0.25 12.12 1.83 44.25 0.08 12.20 16 4 H 0.02 1.25 6.63 -2.39 -0.02 1.24 16 5 C -0.54 -29.34 9.31 25.60 0.24 -29.10 16 6 H 0.06 3.44 7.98 -2.91 -0.02 3.42 16 7 C 0.03 1.93 5.45 84.66 0.46 2.39 16 8 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 9 Si 0.93 45.03 24.41 68.60 1.67 46.71 16 10 H -0.26 -11.59 6.83 99.48 0.68 -10.91 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.26 -12.83 6.53 99.48 0.65 -12.18 16 13 N -0.69 -28.65 5.02 -450.43 -2.26 -30.91 16 14 C 0.58 23.51 6.34 86.34 0.55 24.05 16 15 O -0.57 -27.55 13.27 -4.46 -0.06 -27.61 16 16 C -0.35 -11.07 6.45 24.06 0.16 -10.92 16 17 S 0.30 5.79 22.14 -56.49 -1.25 4.54 16 18 C -0.18 -2.38 10.91 66.80 0.73 -1.65 16 19 C -0.19 -3.37 10.15 21.12 0.21 -3.16 16 20 C 0.14 4.07 7.48 21.84 0.16 4.23 16 21 F -0.13 -4.42 16.42 44.97 0.74 -3.68 16 22 H 0.04 1.59 7.84 -2.38 -0.02 1.57 16 23 H 0.05 1.99 5.64 -2.39 -0.01 1.98 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 26 H 0.05 2.19 3.21 -2.39 -0.01 2.19 16 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.40 14.54 7.64 -92.71 -0.71 13.83 16 29 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 30 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -71.26 266.90 2.89 -68.37 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.39 Total: 10.48 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 3.36 Total: -12.72 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -1.96 Total: -86.08 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.06 Total: -27.61 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.74 Total: -3.68 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.67 Total: 46.71 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.25 Total: 4.54 kcal Total: -71.26 2.89 -68.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308972287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.562 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds