Wall clock time and date at job start Mon Mar 30 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38465 * 120.03887 * 2 1 4 4 C 1.38335 * 120.20626 * 180.02562 * 3 2 1 5 5 C 1.38013 * 120.24474 * 0.02562 * 4 3 2 6 6 C 1.39582 * 119.74803 * 359.97438 * 5 4 3 7 7 C 1.37840 * 120.04469 * 180.02562 * 2 1 3 8 8 C 1.50727 * 132.47238 * 359.97438 * 7 2 1 9 9 C 1.51401 * 105.83161 * 179.97438 * 8 7 2 10 10 S 1.71165 * 141.92059 * 179.97438 * 9 8 7 11 11 C 1.75794 * 90.61493 * 180.02562 * 10 9 8 12 12 C 1.39871 * 125.27577 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00110 * 359.97438 * 12 11 10 14 14 C 1.40182 * 120.00143 * 180.02562 * 12 11 10 15 15 N 1.30732 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47125 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46701 * 119.99824 * 16 14 12 19 19 H 1.48494 * 109.47055 * 239.99329 * 16 14 12 20 20 N 1.30940 * 109.45119 * 0.02562 * 11 10 9 21 21 C 1.33042 * 116.58077 * 359.97438 * 20 11 10 22 22 H 1.09004 * 109.46462 * 90.00130 * 1 2 3 23 23 H 1.08998 * 109.46861 * 209.99526 * 1 2 3 24 24 H 1.09002 * 109.47086 * 329.99984 * 1 2 3 25 25 H 1.08000 * 119.89562 * 359.74762 * 3 2 1 26 26 H 1.08001 * 119.88082 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.12096 * 179.97438 * 5 4 3 28 28 H 1.08999 * 110.17971 * 299.08827 * 8 7 2 29 29 H 1.09002 * 110.17919 * 60.91073 * 8 7 2 30 30 H 0.96996 * 120.00674 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1987 0.0000 4 6 3.5835 1.2027 -0.0005 5 6 4.2822 0.0125 -0.0016 6 6 3.5876 -1.1983 -0.0016 7 6 2.1972 -1.1932 -0.0005 8 6 1.7443 -2.6308 -0.0007 9 6 3.0096 -3.4624 -0.0020 10 16 3.5557 -5.0846 -0.0026 11 6 5.2277 -4.5416 -0.0036 12 6 6.3486 -5.3781 -0.0049 13 1 6.2220 -6.4507 -0.0050 14 6 7.6365 -4.8244 -0.0050 15 7 7.7898 -3.5262 -0.0044 16 14 9.1335 -5.9417 -0.0061 17 1 8.6928 -7.3598 -0.0060 18 1 9.9484 -5.6761 -1.2188 19 1 9.9494 -5.6773 1.2062 20 7 5.2610 -3.2326 -0.0029 21 6 4.0868 -2.6072 -0.0021 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6591 2.1334 -0.0041 26 1 4.1188 2.1407 -0.0010 27 1 5.3621 0.0180 -0.0024 28 1 1.1573 -2.8403 0.8935 29 1 1.1566 -2.8398 -0.8946 30 1 8.6808 -3.1429 -0.0042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309329065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:44 Heat of formation + Delta-G solvation = 56.804436 kcal Electronic energy + Delta-G solvation = -15779.612680 eV Core-core repulsion = 13244.682489 eV Total energy + Delta-G solvation = -2534.930191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77563 -37.14310 -34.41399 -32.89036 -32.31733 -28.41560 -27.92572 -26.13869 -24.85423 -22.15894 -21.17916 -20.49530 -18.57699 -16.60059 -16.38466 -15.23137 -15.04774 -14.50938 -14.31970 -14.11433 -13.25651 -13.08142 -12.68658 -12.48185 -12.15262 -12.05564 -11.95876 -11.47073 -11.39351 -11.28224 -10.96954 -10.74829 -10.41648 -10.33776 -9.70219 -9.57202 -8.59569 -8.19510 -7.71262 -7.67432 -7.08343 -6.73002 -4.69195 1.53384 1.82436 2.54807 2.91729 3.00753 3.02317 3.09641 3.56317 3.81326 3.99548 4.58002 5.01331 5.10387 5.22732 5.24890 5.49428 5.57949 5.71402 5.76292 5.90642 5.97865 6.10225 6.23580 6.28660 6.38149 6.49392 6.81241 6.89504 6.90775 7.12522 7.30603 7.34460 7.49353 7.93116 8.18257 8.50245 9.81952 10.04168 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032524 B = 0.006122 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.701537 B = 4572.574737 C = 5412.781900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.076 4.076 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.099 4.099 6 C 0.002 3.998 7 C -0.092 4.092 8 C 0.033 3.967 9 C -0.403 4.403 10 S -0.039 6.039 11 C 0.241 3.759 12 C -0.389 4.389 13 H 0.097 0.903 14 C 0.070 3.930 15 N -0.706 5.706 16 Si 0.922 3.078 17 H -0.256 1.256 18 H -0.270 1.270 19 H -0.270 1.270 20 N -0.519 5.519 21 C 0.135 3.865 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 4.631 -0.014 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.076 4.076 3 C -0.150 4.150 4 C -0.142 4.142 5 C -0.118 4.118 6 C 0.000 4.000 7 C -0.094 4.094 8 C -0.006 4.006 9 C -0.527 4.527 10 S 0.221 5.779 11 C -0.013 4.013 12 C -0.432 4.432 13 H 0.115 0.885 14 C -0.160 4.160 15 N -0.328 5.328 16 Si 0.745 3.255 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.195 1.195 20 N -0.237 5.237 21 C -0.002 4.002 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.093 4.013 -0.013 7.296 hybrid contribution 0.675 0.601 -0.005 0.904 sum -5.418 4.614 -0.018 7.116 Atomic orbital electron populations 1.20699 0.91578 1.02301 1.01910 1.19067 0.95420 0.91391 1.01751 1.20849 0.94131 0.96635 1.03395 1.20909 0.94076 0.97402 1.01825 1.21033 1.00311 0.90980 0.99523 1.19004 0.92751 0.90398 0.97863 1.20126 0.93839 0.94552 1.00895 1.18493 0.93868 0.87627 1.00567 1.25010 1.00125 0.96570 1.31018 1.82701 1.09864 1.05741 1.79619 1.23926 0.91544 0.89972 0.95897 1.19008 0.88375 0.94197 1.41650 0.88469 1.26082 1.00519 0.95665 0.93720 1.70030 1.24809 1.11629 1.26288 0.86024 0.79807 0.80798 0.78891 1.17967 1.19448 1.19454 1.67020 1.21795 1.05209 1.29654 1.20380 0.88245 0.92126 0.99488 0.91556 0.91722 0.91939 0.86426 0.86335 0.85759 0.90826 0.90824 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.92 36.01 0.36 -0.96 16 2 C -0.08 -1.23 5.88 -104.68 -0.62 -1.85 16 3 C -0.13 -1.98 9.71 -39.46 -0.38 -2.36 16 4 C -0.12 -2.01 10.03 -39.63 -0.40 -2.41 16 5 C -0.10 -2.00 10.11 -39.16 -0.40 -2.39 16 6 C 0.00 0.05 6.20 -104.41 -0.65 -0.59 16 7 C -0.09 -1.81 6.11 -104.45 -0.64 -2.44 16 8 C 0.03 0.66 6.28 -28.68 -0.18 0.48 16 9 C -0.40 -9.83 7.41 -34.22 -0.25 -10.09 16 10 S -0.04 -0.95 23.14 -107.50 -2.49 -3.44 16 11 C 0.24 6.60 7.04 -17.32 -0.12 6.47 16 12 C -0.39 -10.02 9.38 -38.24 -0.36 -10.38 16 13 H 0.10 2.28 7.85 -52.49 -0.41 1.87 16 14 C 0.07 1.71 5.50 -17.29 -0.10 1.61 16 15 N -0.71 -18.39 11.86 55.56 0.66 -17.74 16 16 Si 0.92 17.56 29.56 -169.99 -5.03 12.54 16 17 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 20 N -0.52 -14.89 8.74 -8.87 -0.08 -14.97 16 21 C 0.14 3.57 7.73 -82.91 -0.64 2.93 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.77 7.79 -51.93 -0.40 0.36 16 24 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 276.52 15.07 4.17 4.17 Total: -1.00 -30.00 276.52 -10.04 -40.04 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -2.91 Total: 1.38 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -4.37 Total: -21.98 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.58 Total: -32.70 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.49 Total: -3.44 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.00 -10.04 -40.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309329065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.844 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds