Wall clock time and date at job start Mon Mar 30 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38465 * 120.03887 * 2 1 4 4 C 1.38335 * 120.20626 * 180.02562 * 3 2 1 5 5 C 1.38013 * 120.24474 * 0.02562 * 4 3 2 6 6 C 1.39582 * 119.74803 * 359.97438 * 5 4 3 7 7 C 1.37840 * 120.04469 * 180.02562 * 2 1 3 8 8 C 1.50727 * 132.47238 * 359.97438 * 7 2 1 9 9 C 1.51401 * 105.83161 * 179.97438 * 8 7 2 10 10 S 1.71165 * 141.92059 * 179.97438 * 9 8 7 11 11 C 1.75794 * 90.61493 * 180.02562 * 10 9 8 12 12 C 1.39871 * 125.27577 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00110 * 359.97438 * 12 11 10 14 14 C 1.40182 * 120.00143 * 180.02562 * 12 11 10 15 15 N 1.30732 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47125 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46701 * 119.99824 * 16 14 12 19 19 H 1.48494 * 109.47055 * 239.99329 * 16 14 12 20 20 N 1.30940 * 109.45119 * 0.02562 * 11 10 9 21 21 C 1.33042 * 116.58077 * 359.97438 * 20 11 10 22 22 H 1.09004 * 109.46462 * 90.00130 * 1 2 3 23 23 H 1.08998 * 109.46861 * 209.99526 * 1 2 3 24 24 H 1.09002 * 109.47086 * 329.99984 * 1 2 3 25 25 H 1.08000 * 119.89562 * 359.74762 * 3 2 1 26 26 H 1.08001 * 119.88082 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.12096 * 179.97438 * 5 4 3 28 28 H 1.08999 * 110.17971 * 299.08827 * 8 7 2 29 29 H 1.09002 * 110.17919 * 60.91073 * 8 7 2 30 30 H 0.96996 * 120.00674 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1987 0.0000 4 6 3.5835 1.2027 -0.0005 5 6 4.2822 0.0125 -0.0016 6 6 3.5876 -1.1983 -0.0016 7 6 2.1972 -1.1932 -0.0005 8 6 1.7443 -2.6308 -0.0007 9 6 3.0096 -3.4624 -0.0020 10 16 3.5557 -5.0846 -0.0026 11 6 5.2277 -4.5416 -0.0036 12 6 6.3486 -5.3781 -0.0049 13 1 6.2220 -6.4507 -0.0050 14 6 7.6365 -4.8244 -0.0050 15 7 7.7898 -3.5262 -0.0044 16 14 9.1335 -5.9417 -0.0061 17 1 8.6928 -7.3598 -0.0060 18 1 9.9484 -5.6761 -1.2188 19 1 9.9494 -5.6773 1.2062 20 7 5.2610 -3.2326 -0.0029 21 6 4.0868 -2.6072 -0.0021 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6591 2.1334 -0.0041 26 1 4.1188 2.1407 -0.0010 27 1 5.3621 0.0180 -0.0024 28 1 1.1573 -2.8403 0.8935 29 1 1.1566 -2.8398 -0.8946 30 1 8.6808 -3.1429 -0.0042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309329065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:44 Heat of formation + Delta-G solvation = 40.051374 kcal Electronic energy + Delta-G solvation = -15780.339147 eV Core-core repulsion = 13244.682489 eV Total energy + Delta-G solvation = -2535.656658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31451 -38.88011 -36.14931 -34.57177 -33.66380 -30.25041 -29.42122 -27.40382 -26.55967 -24.01722 -22.76428 -21.89875 -20.34516 -18.38255 -18.16183 -16.91734 -16.49765 -15.97952 -15.87050 -15.60623 -14.93411 -14.35628 -14.22300 -13.98837 -13.71553 -13.67900 -13.11782 -13.00159 -12.90805 -12.72880 -12.70898 -12.21718 -11.98699 -11.75956 -11.52587 -11.33019 -10.18179 -9.78409 -9.63982 -9.42154 -8.86867 -8.58402 -6.65856 -0.03084 0.44809 0.79875 1.09989 1.40683 1.50159 1.57749 1.64605 2.17414 2.35603 2.90952 3.33086 3.50803 3.63158 4.02001 4.14321 4.17777 4.45766 4.54872 4.64294 4.69891 4.82618 4.90862 4.93337 4.97484 5.05288 5.24158 5.39763 5.48004 5.57781 5.64515 5.77926 6.02896 6.12176 6.27169 6.56262 7.89027 8.23402 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032524 B = 0.006122 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.701537 B = 4572.574737 C = 5412.781900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.070 4.070 3 C -0.116 4.116 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.047 4.047 7 C -0.100 4.100 8 C 0.038 3.962 9 C -0.417 4.417 10 S -0.022 6.022 11 C 0.202 3.798 12 C -0.414 4.414 13 H 0.112 0.888 14 C 0.024 3.976 15 N -0.753 5.753 16 Si 1.008 2.992 17 H -0.243 1.243 18 H -0.263 1.263 19 H -0.263 1.263 20 N -0.561 5.561 21 C 0.095 3.905 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.167 0.833 26 H 0.154 0.846 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 5.975 -0.016 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.050 4.050 7 C -0.103 4.103 8 C 0.000 4.000 9 C -0.541 4.541 10 S 0.238 5.762 11 C -0.052 4.052 12 C -0.457 4.457 13 H 0.130 0.870 14 C -0.201 4.201 15 N -0.375 5.375 16 Si 0.826 3.174 17 H -0.166 1.166 18 H -0.187 1.187 19 H -0.187 1.187 20 N -0.281 5.281 21 C -0.041 4.041 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.184 0.816 26 H 0.171 0.829 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.737 5.375 -0.014 9.421 hybrid contribution 1.070 0.321 -0.006 1.117 sum -6.667 5.696 -0.020 8.769 Atomic orbital electron populations 1.20803 0.88161 1.03943 1.03401 1.19605 0.97816 0.90220 0.99405 1.21437 0.93583 0.98165 1.00179 1.21288 0.95100 0.96977 0.99792 1.21072 0.99591 0.92099 1.01635 1.19236 0.94568 0.89525 1.01623 1.20306 0.92548 0.95570 1.01836 1.18575 0.92058 0.87310 1.02107 1.25708 1.02060 0.96455 1.29871 1.82319 1.08202 1.05947 1.79781 1.24460 0.93450 0.90434 0.96833 1.19540 0.89142 0.94913 1.42130 0.87001 1.27260 1.03528 0.97156 0.92182 1.70144 1.26175 1.14056 1.27161 0.84777 0.74811 0.78710 0.79122 1.16579 1.18704 1.18714 1.66996 1.23769 1.06213 1.31137 1.21156 0.88163 0.94758 0.99997 0.89944 0.91494 0.89024 0.81561 0.82868 0.88055 0.89023 0.89036 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.92 71.24 0.71 -1.37 16 2 C -0.07 -2.03 5.88 -19.90 -0.12 -2.15 16 3 C -0.12 -2.96 9.71 22.35 0.22 -2.75 16 4 C -0.11 -3.43 10.03 22.24 0.22 -3.21 16 5 C -0.12 -5.17 10.11 22.54 0.23 -4.94 16 6 C -0.05 -2.22 6.20 -19.73 -0.12 -2.34 16 7 C -0.10 -3.86 6.11 -19.76 -0.12 -3.98 16 8 C 0.04 1.51 6.28 29.33 0.18 1.69 16 9 C -0.42 -21.05 7.41 25.74 0.19 -20.86 16 10 S -0.02 -1.12 23.14 -56.49 -1.31 -2.42 16 11 C 0.20 11.70 7.04 85.22 0.60 12.30 16 12 C -0.41 -22.22 9.38 23.14 0.22 -22.01 16 13 H 0.11 5.40 7.85 -2.91 -0.02 5.38 16 14 C 0.02 1.22 5.50 85.33 0.47 1.69 16 15 N -0.75 -41.26 11.86 21.87 0.26 -41.00 16 16 Si 1.01 36.39 29.56 68.60 2.03 38.42 16 17 H -0.24 -8.16 7.11 99.48 0.71 -7.46 16 18 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 20 N -0.56 -34.42 8.74 -181.96 -1.59 -36.01 16 21 C 0.10 5.32 7.73 41.83 0.32 5.65 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.07 1.30 7.79 -2.39 -0.02 1.29 16 24 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 25 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 26 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 28 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.29 14.09 8.29 -92.71 -0.77 13.33 16 Total: -1.00 -71.40 276.52 3.55 -67.85 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.16 Total: 15.45 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.00 Total: -42.28 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -1.33 Total: -77.01 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -1.31 Total: -2.42 kcal Total: -71.40 3.55 -67.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309329065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.897 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds