Wall clock time and date at job start Mon Mar 30 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48494 * 109.47223 * 269.99967 * 3 2 1 5 5 H 1.48507 * 109.46827 * 29.99846 * 3 2 1 6 6 H 1.48502 * 109.47132 * 149.99541 * 3 2 1 7 7 C 1.37878 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99734 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00004 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47132 * 185.30638 * 9 7 2 11 11 C 1.46979 * 110.99518 * 51.94502 * 10 9 7 12 12 C 1.53350 * 109.09012 * 52.29866 * 11 10 9 13 13 C 1.51417 * 108.08133 * 48.81922 * 12 11 10 14 14 S 1.75587 * 125.97886 * 164.45950 * 13 12 11 15 15 C 1.75787 * 91.05547 * 180.02562 * 14 13 12 16 16 Cl 1.73601 * 125.20122 * 179.97438 * 15 14 13 17 17 C 1.33121 * 109.59587 * 359.97438 * 15 14 13 18 18 C 1.34769 * 123.95358 * 344.48723 * 13 12 11 19 19 C 1.46905 * 110.99926 * 176.28143 * 10 9 7 20 20 H 0.96995 * 120.00716 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47206 * 65.30403 * 9 7 2 22 22 H 1.09002 * 109.47202 * 305.30853 * 9 7 2 23 23 H 1.08994 * 109.53314 * 292.41316 * 11 10 9 24 24 H 1.09002 * 109.53063 * 172.18295 * 11 10 9 25 25 H 1.08999 * 109.74301 * 289.16863 * 12 11 10 26 26 H 1.08999 * 109.73758 * 168.46295 * 12 11 10 27 27 H 1.07999 * 122.19197 * 179.97438 * 17 15 14 28 28 H 1.08996 * 109.60749 * 168.74631 * 19 10 9 29 29 H 1.09000 * 109.61118 * 48.24096 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5730 -0.1265 11 6 3.3798 -3.2485 -1.2744 12 6 3.5589 -2.3793 -2.5250 13 6 5.0134 -1.9659 -2.6057 14 16 5.8201 -1.3012 -4.0165 15 6 7.3351 -1.1798 -3.1332 16 17 8.8271 -0.5760 -3.7837 17 6 7.1634 -1.6217 -1.8893 18 6 5.8813 -2.0623 -1.5792 19 6 5.4671 -2.6047 -0.2182 20 1 -0.4851 0.8399 -0.0004 21 1 3.8745 -0.7644 0.9348 22 1 3.8752 -0.6001 -0.8375 23 1 2.3171 -3.3935 -1.0804 24 1 3.8581 -4.2154 -1.4310 25 1 2.9280 -1.4935 -2.4512 26 1 3.2890 -2.9513 -3.4127 27 1 7.9673 -1.6380 -1.1683 28 1 5.8182 -3.6310 -0.1111 29 1 5.8964 -1.9847 0.5688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335378793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:25 Heat of formation + Delta-G solvation = 33.215084 kcal Electronic energy + Delta-G solvation = -15007.447655 eV Core-core repulsion = 12469.061704 eV Total energy + Delta-G solvation = -2538.385952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.47434 -36.99103 -35.62296 -32.58239 -31.20388 -29.20429 -27.66462 -24.32312 -23.22408 -22.30491 -20.04426 -18.01028 -17.19045 -16.85191 -15.44296 -14.83054 -14.64682 -14.27723 -13.80049 -13.46574 -13.04054 -12.76041 -12.48417 -12.37023 -11.97716 -11.68059 -11.19045 -11.09487 -11.01936 -10.70581 -10.58297 -10.43861 -10.23455 -9.85645 -9.24197 -8.64663 -8.40012 -8.10379 -7.49495 -6.11449 -4.09496 0.96979 1.20780 1.96823 2.29068 2.70889 3.25005 3.33585 3.37316 4.37692 4.81228 5.04859 5.17358 5.22532 5.38138 5.64293 5.70559 5.88377 5.93221 6.01928 6.06468 6.29640 6.51773 6.63813 6.69765 6.88878 7.02735 7.51239 7.80698 7.97308 8.57526 8.95327 9.50661 11.00971 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.007048 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.496836 B = 3971.706829 C = 4326.630431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.868 3.132 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.157 3.843 10 N -0.522 5.522 11 C 0.077 3.923 12 C -0.087 4.087 13 C -0.146 4.146 14 S 0.128 5.872 15 C -0.164 4.164 16 Cl -0.028 7.028 17 C -0.098 4.098 18 C -0.145 4.145 19 C 0.117 3.883 20 H 0.264 0.736 21 H 0.027 0.973 22 H -0.006 1.006 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.787 -3.785 -6.776 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.696 3.304 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.101 0.899 9 C 0.031 3.969 10 N -0.243 5.243 11 C -0.053 4.053 12 C -0.128 4.128 13 C -0.264 4.264 14 S 0.393 5.607 15 C -0.307 4.307 16 Cl 0.001 6.999 17 C -0.131 4.131 18 C -0.158 4.158 19 C -0.015 4.015 20 H 0.074 0.926 21 H 0.045 0.955 22 H 0.012 0.988 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.100 0.900 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.192 -3.486 -7.896 15.765 hybrid contribution 1.396 1.376 0.488 2.020 sum 14.589 -2.111 -7.409 16.498 Atomic orbital electron populations 1.69875 1.06086 1.26929 1.50722 1.24860 0.94652 0.98702 0.94703 0.86956 0.80528 0.84305 0.78644 1.20283 1.21099 1.19118 1.21058 0.88641 0.94738 1.50851 0.89888 1.20249 0.96881 0.84230 0.95541 1.62264 1.02442 1.20062 1.39519 1.22066 1.01819 0.94765 0.86676 1.21123 0.88193 1.02903 1.00537 1.25132 1.00995 1.04976 0.95328 1.84123 0.98787 1.63485 1.14344 1.24782 0.92907 1.14081 0.98897 1.98333 1.29531 1.86449 1.85624 1.19976 0.98135 1.00089 0.94909 1.20452 0.91898 1.04120 0.99297 1.21294 0.90172 1.00051 0.89952 0.92592 0.95491 0.98831 0.88442 0.92414 0.87567 0.90772 0.83887 0.89978 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.96 55.43 0.77 -25.80 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.87 21.25 27.37 -169.99 -4.65 16.60 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.27 -6.37 6.70 56.52 0.38 -5.99 15 7 C -0.51 -13.77 8.26 -34.44 -0.28 -14.06 15 8 H 0.08 2.38 6.61 -52.49 -0.35 2.04 15 9 C 0.16 3.65 3.20 -4.97 -0.02 3.63 15 10 N -0.52 -10.29 5.05 -236.25 -1.19 -11.48 15 11 C 0.08 1.38 5.47 -3.60 -0.02 1.36 15 12 C -0.09 -1.51 5.68 -27.35 -0.16 -1.67 15 13 C -0.15 -2.47 5.62 -35.19 -0.20 -2.66 15 14 S 0.13 1.91 23.32 -107.50 -2.51 -0.60 15 15 C -0.16 -2.38 7.08 28.95 0.20 -2.17 15 16 Cl -0.03 -0.35 29.28 -51.86 -1.52 -1.87 15 17 C -0.10 -1.43 9.97 -41.06 -0.41 -1.84 15 18 C -0.14 -2.36 5.26 -104.77 -0.55 -2.91 15 19 C 0.12 1.90 6.04 -4.20 -0.03 1.87 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.03 0.65 7.57 -51.93 -0.39 0.26 15 22 H -0.01 -0.14 4.98 -51.93 -0.26 -0.40 15 23 H 0.10 1.91 6.45 -51.93 -0.33 1.58 15 24 H 0.06 0.90 8.06 -51.93 -0.42 0.48 15 25 H 0.11 2.18 6.58 -51.93 -0.34 1.84 15 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 27 H 0.14 1.78 8.06 -52.49 -0.42 1.36 15 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 29 H 0.08 1.28 8.06 -51.93 -0.42 0.86 15 LS Contribution 262.88 15.07 3.96 3.96 Total: -1.00 -28.46 262.88 -9.62 -38.09 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -2.94 Total: -2.38 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -1.55 Total: -16.52 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.42 Total: -37.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.65 Total: 16.60 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.51 Total: -0.60 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.46 -9.62 -38.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335378793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.300 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds