Wall clock time and date at job start Mon Mar 30 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48494 * 109.47223 * 269.99967 * 3 2 1 5 5 H 1.48507 * 109.46827 * 29.99846 * 3 2 1 6 6 H 1.48502 * 109.47132 * 149.99541 * 3 2 1 7 7 C 1.37878 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99734 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00004 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47132 * 185.30638 * 9 7 2 11 11 C 1.46979 * 110.99518 * 51.94502 * 10 9 7 12 12 C 1.53350 * 109.09012 * 52.29866 * 11 10 9 13 13 C 1.51417 * 108.08133 * 48.81922 * 12 11 10 14 14 S 1.75587 * 125.97886 * 164.45950 * 13 12 11 15 15 C 1.75787 * 91.05547 * 180.02562 * 14 13 12 16 16 Cl 1.73601 * 125.20122 * 179.97438 * 15 14 13 17 17 C 1.33121 * 109.59587 * 359.97438 * 15 14 13 18 18 C 1.34769 * 123.95358 * 344.48723 * 13 12 11 19 19 C 1.46905 * 110.99926 * 176.28143 * 10 9 7 20 20 H 0.96995 * 120.00716 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47206 * 65.30403 * 9 7 2 22 22 H 1.09002 * 109.47202 * 305.30853 * 9 7 2 23 23 H 1.08994 * 109.53314 * 292.41316 * 11 10 9 24 24 H 1.09002 * 109.53063 * 172.18295 * 11 10 9 25 25 H 1.08999 * 109.74301 * 289.16863 * 12 11 10 26 26 H 1.08999 * 109.73758 * 168.46295 * 12 11 10 27 27 H 1.07999 * 122.19197 * 179.97438 * 17 15 14 28 28 H 1.08996 * 109.60749 * 168.74631 * 19 10 9 29 29 H 1.09000 * 109.61118 * 48.24096 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5730 -0.1265 11 6 3.3798 -3.2485 -1.2744 12 6 3.5589 -2.3793 -2.5250 13 6 5.0134 -1.9659 -2.6057 14 16 5.8201 -1.3012 -4.0165 15 6 7.3351 -1.1798 -3.1332 16 17 8.8271 -0.5760 -3.7837 17 6 7.1634 -1.6217 -1.8893 18 6 5.8813 -2.0623 -1.5792 19 6 5.4671 -2.6047 -0.2182 20 1 -0.4851 0.8399 -0.0004 21 1 3.8745 -0.7644 0.9348 22 1 3.8752 -0.6001 -0.8375 23 1 2.3171 -3.3935 -1.0804 24 1 3.8581 -4.2154 -1.4310 25 1 2.9280 -1.4935 -2.4512 26 1 3.2890 -2.9513 -3.4127 27 1 7.9673 -1.6380 -1.1683 28 1 5.8182 -3.6310 -0.1111 29 1 5.8964 -1.9847 0.5688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335378793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:25 Heat of formation + Delta-G solvation = 15.522790 kcal Electronic energy + Delta-G solvation = -15008.214851 eV Core-core repulsion = 12469.061704 eV Total energy + Delta-G solvation = -2539.153147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82987 -38.11424 -36.93025 -34.63396 -32.62476 -30.74126 -29.27379 -25.87857 -24.56355 -23.84717 -21.53627 -19.32253 -18.87196 -18.45886 -16.71345 -16.53832 -16.04293 -15.90542 -15.20903 -14.96047 -14.40443 -14.36544 -13.94280 -13.70162 -13.48921 -13.15182 -12.79418 -12.66362 -12.39577 -12.14346 -11.96542 -11.87944 -11.72094 -11.67996 -11.24279 -10.78481 -9.56342 -9.31373 -9.05122 -8.27121 -6.28381 -0.21839 0.06666 0.79021 1.17175 1.30974 1.34167 1.43320 1.52330 2.33033 3.07732 3.32035 3.76687 3.93906 4.14317 4.27535 4.46940 4.60154 4.67667 4.75763 4.81285 4.86875 5.03048 5.10179 5.22590 5.33147 5.42170 5.56062 6.00776 6.32524 6.66333 6.78852 7.35277 8.88583 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.007048 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.496836 B = 3971.706829 C = 4326.630431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.019 3.981 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.172 3.828 10 N -0.535 5.535 11 C 0.079 3.921 12 C -0.080 4.080 13 C -0.175 4.175 14 S 0.141 5.859 15 C -0.164 4.164 16 Cl -0.008 7.008 17 C -0.101 4.101 18 C -0.144 4.144 19 C 0.116 3.884 20 H 0.265 0.735 21 H 0.021 0.979 22 H -0.008 1.008 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.168 0.832 28 H 0.110 0.890 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.529 -3.606 -7.135 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.179 4.179 3 Si 0.752 3.248 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.044 3.956 10 N -0.256 5.256 11 C -0.051 4.051 12 C -0.121 4.121 13 C -0.293 4.293 14 S 0.406 5.594 15 C -0.307 4.307 16 Cl 0.020 6.980 17 C -0.134 4.134 18 C -0.158 4.158 19 C -0.014 4.014 20 H 0.074 0.926 21 H 0.039 0.961 22 H 0.009 0.991 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.185 0.815 28 H 0.128 0.872 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.957 -3.323 -8.260 18.273 hybrid contribution 0.591 1.228 0.557 1.472 sum 16.549 -2.095 -7.704 18.374 Atomic orbital electron populations 1.70008 1.07787 1.27830 1.52803 1.25619 0.95313 1.02234 0.94743 0.86001 0.79725 0.80179 0.78858 1.19844 1.20797 1.17723 1.21269 0.90764 0.93413 1.49242 0.93114 1.19935 0.94207 0.86522 0.94901 1.62151 1.04946 1.17775 1.40743 1.22010 1.00452 0.96095 0.86548 1.20908 0.88615 1.01430 1.01148 1.25085 1.00684 1.06768 0.96765 1.84053 0.98919 1.63029 1.13386 1.24939 0.93441 1.13413 0.98912 1.98346 1.28159 1.86129 1.85365 1.20123 0.98034 0.99767 0.95463 1.20552 0.92593 1.03771 0.98848 1.21417 0.87598 1.02037 0.90386 0.92552 0.96072 0.99079 0.91244 0.89437 0.91382 0.88750 0.81492 0.87212 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.96 21.45 0.30 -57.15 15 2 C 0.02 1.06 5.47 84.66 0.46 1.53 15 3 Si 0.93 43.87 27.37 68.60 1.88 45.75 15 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 15 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 15 6 H -0.25 -11.35 6.70 99.48 0.67 -10.68 15 7 C -0.51 -27.88 8.26 25.60 0.21 -27.67 15 8 H 0.05 3.05 6.61 -2.91 -0.02 3.03 15 9 C 0.17 7.88 3.20 85.56 0.27 8.16 15 10 N -0.54 -20.55 5.05 -901.36 -4.55 -25.10 15 11 C 0.08 2.79 5.47 86.41 0.47 3.27 15 12 C -0.08 -2.78 5.68 30.19 0.17 -2.61 15 13 C -0.18 -5.60 5.62 25.12 0.14 -5.46 15 14 S 0.14 3.93 23.32 -56.49 -1.32 2.61 15 15 C -0.16 -4.26 7.08 66.67 0.47 -3.79 15 16 Cl -0.01 -0.19 29.28 -2.72 -0.08 -0.27 15 17 C -0.10 -2.62 9.97 21.32 0.21 -2.41 15 18 C -0.14 -4.32 5.26 -19.96 -0.11 -4.42 15 19 C 0.12 3.46 6.04 86.06 0.52 3.98 15 20 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 21 H 0.02 1.00 7.57 -2.39 -0.02 0.98 15 22 H -0.01 -0.39 4.98 -2.39 -0.01 -0.41 15 23 H 0.07 2.83 6.45 -2.39 -0.02 2.81 15 24 H 0.09 2.57 8.06 -2.39 -0.02 2.55 15 25 H 0.07 2.87 6.58 -2.39 -0.02 2.85 15 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 27 H 0.17 3.45 8.06 -2.91 -0.02 3.43 15 28 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 29 H 0.09 2.55 8.06 -2.39 -0.02 2.53 15 Total: -1.00 -61.19 262.88 0.19 -61.00 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.13 Total: 2.60 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 2.83 Total: -29.43 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -4.25 Total: -82.26 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.32 Total: 2.61 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.27 kcal Total: -61.19 0.19 -61.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335378793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.520 kcal (2) G-P(sol) polarization free energy of solvation -61.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds