Wall clock time and date at job start Mon Mar 30 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47734 * 2 1 4 4 C 1.50700 * 109.47288 * 239.99553 * 2 1 3 5 5 H 1.08002 * 119.99964 * 275.01185 * 4 2 1 6 6 C 1.37876 * 119.99845 * 95.00756 * 4 2 1 7 7 N 1.31515 * 119.99947 * 184.95894 * 6 4 2 8 8 Si 1.86800 * 120.00249 * 4.95703 * 6 4 2 9 9 H 1.48501 * 109.47057 * 84.91107 * 8 6 4 10 10 H 1.48502 * 109.47179 * 204.91476 * 8 6 4 11 11 H 1.48507 * 109.46901 * 324.91334 * 8 6 4 12 12 N 1.46509 * 109.47017 * 119.99807 * 2 1 3 13 13 C 1.46490 * 119.99875 * 59.99973 * 12 2 1 14 14 C 1.34779 * 119.99729 * 239.99814 * 12 2 1 15 15 O 1.21743 * 120.00160 * 6.29980 * 14 12 2 16 16 C 1.46291 * 119.99904 * 186.30211 * 14 12 2 17 17 S 1.75831 * 125.46076 * 7.76488 * 16 14 12 18 18 C 1.70606 * 91.60455 * 179.97438 * 17 16 14 19 19 C 1.33732 * 111.04127 * 359.97438 * 18 17 16 20 20 C 1.36922 * 125.46550 * 187.46077 * 16 14 12 21 21 F 1.35094 * 123.40681 * 0.02562 * 20 16 14 22 22 H 1.08999 * 109.46939 * 54.92969 * 1 2 3 23 23 H 1.09008 * 109.46797 * 294.93532 * 1 2 3 24 24 H 1.08990 * 109.47341 * 174.93339 * 1 2 3 25 25 H 0.96999 * 120.00175 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47615 * 95.94173 * 13 12 2 27 27 H 1.09002 * 109.46854 * 215.94352 * 13 12 2 28 28 H 1.08997 * 109.47408 * 335.94383 * 13 12 2 29 29 H 1.07999 * 124.47895 * 180.02562 * 18 17 16 30 30 H 1.07993 * 122.45673 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1353 -1.7856 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7053 -0.6134 -3.4623 8 14 2.3150 1.8790 -2.3171 9 1 3.6018 2.3939 -1.7839 10 1 2.1051 2.3992 -3.6921 11 1 1.2017 2.3280 -1.4427 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 2.9932 1.1581 1.9521 16 6 3.3940 -0.7589 3.2040 17 16 3.3632 -2.5028 3.4265 18 6 4.2441 -2.3809 4.8824 19 6 4.5324 -1.1057 5.1638 20 6 4.0754 -0.1871 4.2449 21 9 4.2764 1.1438 4.3606 22 1 -0.3633 0.5905 -0.8411 23 1 -0.3633 0.4333 0.9320 24 1 -0.3633 -1.0235 -0.0907 25 1 2.9365 -0.1051 -4.2555 26 1 2.4669 -2.7352 1.0652 27 1 1.5203 -2.2597 2.4956 28 1 0.7425 -2.3279 0.8961 29 1 4.5317 -3.2223 5.4953 30 1 5.0856 -0.8175 6.0453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335571471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:38 Heat of formation + Delta-G solvation = -38.426990 kcal Electronic energy + Delta-G solvation = -17160.170272 eV Core-core repulsion = 14190.341312 eV Total energy + Delta-G solvation = -2969.828960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.62693 -39.24492 -37.22628 -35.44644 -32.83480 -30.94989 -29.07330 -26.58417 -25.32778 -24.72466 -22.06962 -19.69542 -19.21779 -17.87447 -17.02601 -16.47759 -15.81665 -15.70284 -15.11993 -14.62326 -14.40604 -14.01142 -13.71897 -13.04157 -12.74324 -12.63092 -12.45619 -12.41298 -12.20294 -11.69580 -11.45001 -11.08576 -10.83493 -10.57950 -10.43959 -9.82998 -9.43588 -9.24127 -8.86114 -8.64508 -8.41764 -7.74659 -6.21171 -4.24009 0.49420 1.41815 1.87330 2.25470 3.29582 3.37406 3.45220 3.61167 3.67385 4.35727 4.36656 4.88493 4.97652 5.19399 5.28170 5.38669 5.65431 5.78225 5.84558 6.05218 6.26925 6.35627 6.37298 6.53089 6.87672 7.00677 7.37847 7.55995 8.00876 8.40482 8.76113 8.80988 9.41014 10.90439 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.007172 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.482930 B = 3902.976293 C = 4326.839768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.224 3.776 3 H 0.066 0.934 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.262 1.262 12 N -0.582 5.582 13 C 0.069 3.931 14 C 0.576 3.424 15 O -0.537 6.537 16 C -0.300 4.300 17 S 0.283 5.717 18 C -0.252 4.252 19 C -0.177 4.177 20 C 0.146 3.854 21 F -0.108 7.108 22 H 0.058 0.942 23 H 0.028 0.972 24 H 0.051 0.949 25 H 0.267 0.733 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.171 0.829 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -6.206 15.359 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.124 3.876 3 H 0.084 0.916 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.699 3.301 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.312 5.312 13 C -0.076 4.076 14 C 0.363 3.637 15 O -0.416 6.416 16 C -0.422 4.422 17 S 0.550 5.450 18 C -0.389 4.389 19 C -0.209 4.209 20 C 0.111 3.889 21 F -0.087 7.087 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.189 0.811 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.520 -6.728 14.261 15.777 hybrid contribution 0.874 2.190 0.887 2.519 sum 0.355 -4.538 15.148 15.817 Atomic orbital electron populations 1.22225 0.98038 1.00947 0.99425 1.19407 0.91069 0.94957 0.82131 0.91585 1.21106 1.45051 0.95749 0.94636 0.90260 1.24944 0.93610 0.98542 0.95195 1.69878 1.44819 1.36147 1.01690 0.86927 0.80085 0.86012 0.77113 1.19554 1.21222 1.18675 1.48236 1.48673 1.11510 1.22823 1.21779 1.02790 0.83568 0.99491 1.16782 0.79527 0.86491 0.80926 1.90821 1.62019 1.14020 1.74771 1.24992 1.14326 0.99008 1.03827 1.83740 1.46337 0.99883 1.15011 1.25611 1.06104 1.00994 1.06190 1.19740 1.06840 0.92025 1.02336 1.16873 0.98583 0.79029 0.94372 1.91549 1.92584 1.29080 1.95455 0.92344 0.95270 0.93019 0.92283 0.91875 0.92236 0.88792 0.81112 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.07 37.16 0.34 -2.73 16 2 C 0.22 5.41 2.28 -69.08 -0.16 5.25 16 3 H 0.07 1.76 4.06 -51.93 -0.21 1.55 16 4 C -0.53 -14.29 8.82 -34.44 -0.30 -14.60 16 5 H 0.08 2.25 7.67 -52.49 -0.40 1.84 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 8 Si 0.87 22.16 26.99 -169.99 -4.59 17.58 16 9 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.44 6.81 56.52 0.39 -6.06 16 12 N -0.58 -12.31 2.75 -176.95 -0.49 -12.80 16 13 C 0.07 1.11 7.88 59.84 0.47 1.58 16 14 C 0.58 12.67 7.61 -13.02 -0.10 12.57 16 15 O -0.54 -13.90 15.51 5.15 0.08 -13.82 16 16 C -0.30 -5.24 6.19 -36.82 -0.23 -5.46 16 17 S 0.28 3.38 17.91 -107.50 -1.92 1.46 16 18 C -0.25 -2.57 10.91 29.15 0.32 -2.25 16 19 C -0.18 -2.17 10.15 -41.35 -0.42 -2.59 16 20 C 0.15 2.41 7.47 -40.24 -0.30 2.11 16 21 F -0.11 -2.02 16.45 2.25 0.04 -1.99 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.05 0.97 6.87 -51.93 -0.36 0.62 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.06 0.98 7.45 -51.93 -0.39 0.59 16 27 H 0.06 0.77 5.20 -28.38 -0.15 0.63 16 28 H 0.09 1.43 6.54 -51.93 -0.34 1.09 16 29 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -33.11 268.96 -5.22 -38.33 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -2.69 Total: -3.28 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.48 Total: -3.91 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.29 Total: -38.42 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.59 Total: 17.58 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.92 Total: 1.46 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.11 -5.22 -38.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335571471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.096 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds