Wall clock time and date at job start Mon Mar 30 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47734 * 2 1 4 4 C 1.50700 * 109.47288 * 239.99553 * 2 1 3 5 5 H 1.08002 * 119.99964 * 275.01185 * 4 2 1 6 6 C 1.37876 * 119.99845 * 95.00756 * 4 2 1 7 7 N 1.31515 * 119.99947 * 184.95894 * 6 4 2 8 8 Si 1.86800 * 120.00249 * 4.95703 * 6 4 2 9 9 H 1.48501 * 109.47057 * 84.91107 * 8 6 4 10 10 H 1.48502 * 109.47179 * 204.91476 * 8 6 4 11 11 H 1.48507 * 109.46901 * 324.91334 * 8 6 4 12 12 N 1.46509 * 109.47017 * 119.99807 * 2 1 3 13 13 C 1.46490 * 119.99875 * 59.99973 * 12 2 1 14 14 C 1.34779 * 119.99729 * 239.99814 * 12 2 1 15 15 O 1.21743 * 120.00160 * 6.29980 * 14 12 2 16 16 C 1.46291 * 119.99904 * 186.30211 * 14 12 2 17 17 S 1.75831 * 125.46076 * 7.76488 * 16 14 12 18 18 C 1.70606 * 91.60455 * 179.97438 * 17 16 14 19 19 C 1.33732 * 111.04127 * 359.97438 * 18 17 16 20 20 C 1.36922 * 125.46550 * 187.46077 * 16 14 12 21 21 F 1.35094 * 123.40681 * 0.02562 * 20 16 14 22 22 H 1.08999 * 109.46939 * 54.92969 * 1 2 3 23 23 H 1.09008 * 109.46797 * 294.93532 * 1 2 3 24 24 H 1.08990 * 109.47341 * 174.93339 * 1 2 3 25 25 H 0.96999 * 120.00175 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47615 * 95.94173 * 13 12 2 27 27 H 1.09002 * 109.46854 * 215.94352 * 13 12 2 28 28 H 1.08997 * 109.47408 * 335.94383 * 13 12 2 29 29 H 1.07999 * 124.47895 * 180.02562 * 18 17 16 30 30 H 1.07993 * 122.45673 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1353 -1.7856 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7053 -0.6134 -3.4623 8 14 2.3150 1.8790 -2.3171 9 1 3.6018 2.3939 -1.7839 10 1 2.1051 2.3992 -3.6921 11 1 1.2017 2.3280 -1.4427 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 2.9932 1.1581 1.9521 16 6 3.3940 -0.7589 3.2040 17 16 3.3632 -2.5028 3.4265 18 6 4.2441 -2.3809 4.8824 19 6 4.5324 -1.1057 5.1638 20 6 4.0754 -0.1871 4.2449 21 9 4.2764 1.1438 4.3606 22 1 -0.3633 0.5905 -0.8411 23 1 -0.3633 0.4333 0.9320 24 1 -0.3633 -1.0235 -0.0907 25 1 2.9365 -0.1051 -4.2555 26 1 2.4669 -2.7352 1.0652 27 1 1.5203 -2.2597 2.4956 28 1 0.7425 -2.3279 0.8961 29 1 4.5317 -3.2223 5.4953 30 1 5.0856 -0.8175 6.0453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335571471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:37 Heat of formation + Delta-G solvation = -61.428136 kcal Electronic energy + Delta-G solvation = -17161.167676 eV Core-core repulsion = 14190.341312 eV Total energy + Delta-G solvation = -2970.826365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.95145 -40.87008 -38.34049 -37.17981 -34.83001 -32.71042 -30.34568 -28.01742 -27.29270 -25.93211 -23.54045 -21.21325 -20.50793 -19.49002 -18.79506 -17.93214 -17.34156 -17.06494 -16.73657 -16.16702 -15.80216 -15.37282 -14.94638 -14.67640 -14.45480 -14.26065 -14.09351 -13.90477 -13.50606 -13.09856 -13.07045 -12.80220 -12.67529 -12.36437 -11.87805 -11.60093 -11.33073 -11.01986 -10.82372 -10.02606 -9.59994 -9.24419 -8.40450 -6.43774 -0.64057 0.33443 0.90259 1.19716 1.23705 1.30762 1.39341 2.04061 2.13280 2.24770 3.00884 3.30994 3.55575 3.98135 4.14364 4.38086 4.45973 4.50307 4.70933 4.71796 4.75469 4.83862 4.90823 5.08789 5.26764 5.32382 5.49218 5.70150 6.10670 6.55168 6.61857 7.11455 7.25395 8.74434 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.007172 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.482930 B = 3902.976293 C = 4326.839768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.222 3.778 3 H 0.036 0.964 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.035 3.965 7 N -0.928 5.928 8 Si 0.917 3.083 9 H -0.289 1.289 10 H -0.273 1.273 11 H -0.253 1.253 12 N -0.589 5.589 13 C 0.062 3.938 14 C 0.566 3.434 15 O -0.596 6.596 16 C -0.359 4.359 17 S 0.344 5.656 18 C -0.213 4.213 19 C -0.189 4.189 20 C 0.134 3.866 21 F -0.132 7.132 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.269 0.731 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.221 0.779 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 -8.417 17.809 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.120 3.880 3 H 0.054 0.946 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.165 4.165 7 N -0.567 5.567 8 Si 0.743 3.257 9 H -0.216 1.216 10 H -0.198 1.198 11 H -0.176 1.176 12 N -0.319 5.319 13 C -0.081 4.081 14 C 0.356 3.644 15 O -0.480 6.480 16 C -0.480 4.480 17 S 0.611 5.389 18 C -0.350 4.350 19 C -0.219 4.219 20 C 0.098 3.902 21 F -0.110 7.110 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.238 0.762 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.785 -8.981 16.720 18.996 hybrid contribution 1.005 2.712 0.273 2.905 sum 0.220 -6.270 16.993 18.114 Atomic orbital electron populations 1.22088 0.95255 1.02381 1.00102 1.19230 0.93110 0.93348 0.82308 0.94575 1.21323 1.43753 0.95091 0.95582 0.91943 1.25519 0.94103 1.01620 0.95271 1.69956 1.46998 1.37357 1.02370 0.86210 0.79336 0.82526 0.77634 1.21596 1.19772 1.17649 1.48143 1.48577 1.13390 1.21774 1.22085 1.03338 0.80649 1.02050 1.17398 0.78932 0.86210 0.81872 1.90762 1.63987 1.16664 1.76564 1.24759 1.17088 1.02691 1.03453 1.83349 1.45713 0.94655 1.15161 1.26185 1.02536 1.01571 1.04749 1.19914 1.07671 0.91733 1.02597 1.17574 0.98649 0.78661 0.95306 1.91480 1.92762 1.31161 1.95625 0.92871 0.93616 0.90979 0.92133 0.91293 0.88902 0.87968 0.76191 0.80601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 9.07 71.98 0.65 -5.01 16 2 C 0.22 10.77 2.28 44.24 0.10 10.87 16 3 H 0.04 1.98 4.06 -2.38 -0.01 1.98 16 4 C -0.52 -28.51 8.82 25.60 0.23 -28.28 16 5 H 0.06 3.58 7.67 -2.91 -0.02 3.56 16 6 C 0.04 2.03 5.47 84.65 0.46 2.50 16 7 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 8 Si 0.92 46.83 26.99 68.60 1.85 48.68 16 9 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 10 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.25 -12.35 6.81 99.48 0.68 -11.67 16 12 N -0.59 -24.87 2.75 -831.94 -2.29 -27.16 16 13 C 0.06 1.87 7.88 127.77 1.01 2.88 16 14 C 0.57 25.37 7.61 86.34 0.66 26.02 16 15 O -0.60 -32.36 15.51 -4.48 -0.07 -32.43 16 16 C -0.36 -12.22 6.19 24.06 0.15 -12.07 16 17 S 0.34 6.89 17.91 -56.49 -1.01 5.88 16 18 C -0.21 -3.16 10.91 66.80 0.73 -2.43 16 19 C -0.19 -3.92 10.15 21.13 0.21 -3.71 16 20 C 0.13 4.30 7.47 21.84 0.16 4.47 16 21 F -0.13 -5.05 16.45 44.97 0.74 -4.31 16 22 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.07 2.58 6.87 -2.39 -0.02 2.57 16 25 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 26 H 0.07 1.99 7.45 -2.39 -0.02 1.97 16 27 H 0.09 2.12 5.20 -17.36 -0.09 2.03 16 28 H 0.10 2.88 6.54 -2.39 -0.02 2.87 16 29 H 0.22 1.20 8.06 -2.91 -0.02 1.17 16 30 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -76.66 268.96 4.95 -71.71 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: 1.06 Total: -1.75 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.36 Total: -4.77 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.99 Total: -83.01 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.07 Total: -32.43 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.74 Total: -4.31 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.85 Total: 48.68 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.01 Total: 5.88 kcal Total: -76.66 4.95 -71.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335571471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.282 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds