Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48496 * 109.46833 * 269.99644 * 3 2 1 5 5 H 1.48493 * 109.47386 * 29.99764 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99960 * 3 2 1 7 7 C 1.37878 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47380 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47229 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47162 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99969 * 180.02562 * 12 11 10 14 14 O 1.21741 * 120.00048 * 359.71682 * 13 12 11 15 15 C 1.46296 * 120.00081 * 180.02562 * 13 12 11 16 16 S 1.75822 * 125.46217 * 359.74152 * 15 13 12 17 17 C 1.70596 * 91.60803 * 180.02562 * 16 15 13 18 18 C 1.33732 * 111.03888 * 0.02562 * 17 16 15 19 19 C 1.36925 * 125.46488 * 179.44143 * 15 13 12 20 20 F 1.35097 * 123.40929 * 359.97438 * 19 15 13 21 21 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46987 * 59.99452 * 9 7 2 23 23 H 1.08997 * 109.46849 * 300.00214 * 9 7 2 24 24 H 1.08995 * 109.46848 * 59.99690 * 10 9 7 25 25 H 1.09006 * 109.46876 * 300.00330 * 10 9 7 26 26 H 1.08995 * 109.47596 * 59.99979 * 11 10 9 27 27 H 1.09006 * 109.47322 * 299.99887 * 11 10 9 28 28 H 0.96998 * 119.99501 * 359.97438 * 12 11 10 29 29 H 1.07996 * 124.48022 * 179.97438 * 17 16 15 30 30 H 1.07999 * 122.45511 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4320 -6.1007 0.0005 13 6 1.9827 -7.3713 -0.0004 14 8 0.7858 -7.5937 0.0034 15 6 2.9333 -8.4834 0.0008 16 16 4.6846 -8.3282 -0.0031 17 6 4.8828 -10.0227 0.0004 18 6 3.6988 -10.6445 0.0036 19 6 2.6018 -9.8118 0.0109 20 9 1.3275 -10.2605 0.0217 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5566 0.8903 24 1 2.8717 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8537 -5.0446 -0.8903 27 1 0.8531 -5.0451 0.8897 28 1 3.3857 -5.9234 0.0008 29 1 5.8380 -10.5265 -0.0007 30 1 3.6094 -11.7208 0.0057 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336701405.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -64.164316 kcal Electronic energy + Delta-G solvation = -15835.979366 eV Core-core repulsion = 12865.034351 eV Total energy + Delta-G solvation = -2970.945014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.00239 -39.54957 -37.57928 -35.43506 -33.36520 -31.47389 -30.00086 -26.88680 -25.10638 -23.24077 -21.30619 -20.70263 -19.86235 -18.65854 -17.19552 -16.33941 -16.07761 -16.02675 -15.19703 -15.15487 -14.73058 -14.46608 -14.15555 -13.88297 -13.56760 -12.76033 -12.33122 -12.18922 -11.86431 -11.75674 -11.48428 -10.91694 -10.76760 -10.61331 -10.11290 -9.89496 -9.44843 -9.34138 -9.13945 -8.86358 -8.79883 -8.38081 -6.02632 -4.05918 0.06532 0.97932 1.39141 1.86548 3.11682 3.20121 3.30374 3.36885 3.39612 3.98007 4.43497 4.56727 4.69068 4.91315 5.29954 5.33182 5.44971 5.69877 5.73932 5.95742 6.12260 6.36987 6.56124 6.76927 6.96473 7.54359 7.62254 7.74384 7.95806 8.21446 8.36854 9.00662 9.58339 11.08649 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.043954 B = 0.003577 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.874418 B = 7825.763979 C = 8436.873884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.719 5.719 13 C 0.583 3.417 14 O -0.523 6.523 15 C -0.310 4.310 16 S 0.257 5.743 17 C -0.213 4.213 18 C -0.178 4.178 19 C 0.158 3.842 20 F -0.104 7.104 21 H 0.261 0.739 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.395 0.605 29 H 0.180 0.820 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.376 -20.271 -0.004 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.370 5.370 13 C 0.368 3.632 14 O -0.401 6.401 15 C -0.432 4.432 16 S 0.523 5.477 17 C -0.351 4.351 18 C -0.210 4.210 19 C 0.123 3.877 20 F -0.082 7.082 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.229 0.771 29 H 0.197 0.803 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.296 -19.071 0.000 22.692 hybrid contribution -0.239 -0.432 -0.007 0.493 sum 12.058 -19.503 -0.008 22.929 Atomic orbital electron populations 1.69971 1.06067 1.26712 1.50487 1.25034 0.94862 0.99322 0.95257 0.86572 0.79792 0.83403 0.78095 1.20656 1.21209 1.19878 1.21194 0.92995 0.90906 1.51027 0.92614 1.19034 0.93835 0.90777 0.97759 1.21909 0.99847 0.93190 1.01002 1.21736 0.91710 0.84652 1.02432 1.46066 1.10688 1.05519 1.74692 1.16700 0.87148 0.81866 0.77478 1.90891 1.15091 1.84326 1.49758 1.24824 0.99474 0.97248 1.21643 1.83168 0.96131 1.01789 1.66603 1.25108 1.02934 0.99977 1.07097 1.19852 0.90429 1.02303 1.08400 1.16910 0.80523 0.89934 1.00295 1.91583 1.34703 1.88973 1.92921 0.92905 0.96201 0.96176 0.92594 0.92607 0.91341 0.91339 0.77108 0.80278 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.74 -0.14 -2.50 16 11 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 12 N -0.72 -10.81 5.55 -61.74 -0.34 -11.15 16 13 C 0.58 9.53 7.77 -13.02 -0.10 9.43 16 14 O -0.52 -10.68 16.14 5.15 0.08 -10.60 16 15 C -0.31 -3.96 6.45 -36.82 -0.24 -4.20 16 16 S 0.26 2.05 22.14 -107.50 -2.38 -0.33 16 17 C -0.21 -1.39 10.91 29.15 0.32 -1.07 16 18 C -0.18 -1.50 10.15 -41.35 -0.42 -1.92 16 19 C 0.16 1.96 7.48 -40.25 -0.30 1.66 16 20 F -0.10 -1.54 16.42 2.25 0.04 -1.50 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.40 4.78 7.58 -40.82 -0.31 4.48 16 29 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 286.24 15.07 4.31 4.31 Total: -1.00 -33.24 286.24 -7.26 -40.50 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -3.23 Total: -2.15 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.45 Total: -9.40 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.39 Total: -37.17 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.38 Total: -0.33 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.24 -7.26 -40.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701405.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.666 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds