Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48496 * 109.46833 * 269.99644 * 3 2 1 5 5 H 1.48493 * 109.47386 * 29.99764 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99960 * 3 2 1 7 7 C 1.37878 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47380 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47229 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47162 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99969 * 180.02562 * 12 11 10 14 14 O 1.21741 * 120.00048 * 359.71682 * 13 12 11 15 15 C 1.46296 * 120.00081 * 180.02562 * 13 12 11 16 16 S 1.75822 * 125.46217 * 359.74152 * 15 13 12 17 17 C 1.70596 * 91.60803 * 180.02562 * 16 15 13 18 18 C 1.33732 * 111.03888 * 0.02562 * 17 16 15 19 19 C 1.36925 * 125.46488 * 179.44143 * 15 13 12 20 20 F 1.35097 * 123.40929 * 359.97438 * 19 15 13 21 21 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46987 * 59.99452 * 9 7 2 23 23 H 1.08997 * 109.46849 * 300.00214 * 9 7 2 24 24 H 1.08995 * 109.46848 * 59.99690 * 10 9 7 25 25 H 1.09006 * 109.46876 * 300.00330 * 10 9 7 26 26 H 1.08995 * 109.47596 * 59.99979 * 11 10 9 27 27 H 1.09006 * 109.47322 * 299.99887 * 11 10 9 28 28 H 0.96998 * 119.99501 * 359.97438 * 12 11 10 29 29 H 1.07996 * 124.48022 * 179.97438 * 17 16 15 30 30 H 1.07999 * 122.45511 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4320 -6.1007 0.0005 13 6 1.9827 -7.3713 -0.0004 14 8 0.7858 -7.5937 0.0034 15 6 2.9333 -8.4834 0.0008 16 16 4.6846 -8.3282 -0.0031 17 6 4.8828 -10.0227 0.0004 18 6 3.6988 -10.6445 0.0036 19 6 2.6018 -9.8118 0.0109 20 9 1.3275 -10.2605 0.0217 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5566 0.8903 24 1 2.8717 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8537 -5.0446 -0.8903 27 1 0.8531 -5.0451 0.8897 28 1 3.3857 -5.9234 0.0008 29 1 5.8380 -10.5265 -0.0007 30 1 3.6094 -11.7208 0.0057 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336701405.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -86.952491 kcal Electronic energy + Delta-G solvation = -15836.967535 eV Core-core repulsion = 12865.034351 eV Total energy + Delta-G solvation = -2971.933184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.00741 -40.82240 -38.36356 -37.00353 -35.25160 -33.21695 -31.03603 -28.59018 -26.14779 -24.83867 -22.50153 -22.36534 -20.79098 -19.71957 -18.57750 -18.00169 -17.21866 -17.14816 -16.56700 -16.51663 -16.17158 -15.55611 -15.39724 -14.97623 -14.71502 -14.27236 -13.78734 -13.70073 -13.41161 -12.97186 -12.75133 -12.57225 -12.39903 -12.14831 -11.70153 -11.67832 -11.30409 -11.11967 -10.55000 -10.39074 -9.96009 -9.50915 -8.18928 -6.30627 -0.74314 0.25038 0.73326 1.12270 1.42858 1.44358 1.55322 1.93087 1.98384 2.43206 3.15058 3.23249 3.62581 3.90203 4.11929 4.16851 4.36406 4.50823 4.70034 4.82858 4.90540 4.91477 5.14812 5.18571 5.29024 5.51393 5.69381 5.83948 6.21586 6.34171 6.86834 7.00241 7.39125 8.93298 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.043954 B = 0.003577 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.874418 B = 7825.763979 C = 8436.873884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.707 5.707 13 C 0.580 3.420 14 O -0.579 6.579 15 C -0.361 4.361 16 S 0.319 5.681 17 C -0.181 4.181 18 C -0.190 4.190 19 C 0.142 3.858 20 F -0.129 7.129 21 H 0.263 0.737 22 H -0.008 1.008 23 H -0.008 1.008 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.412 0.588 29 H 0.226 0.774 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.360 -20.940 -0.010 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.359 5.359 13 C 0.368 3.632 14 O -0.460 6.460 15 C -0.482 4.482 16 S 0.585 5.415 17 C -0.319 4.319 18 C -0.221 4.221 19 C 0.106 3.894 20 F -0.107 7.107 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.249 0.751 29 H 0.242 0.758 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 16.342 -19.746 -0.007 25.631 hybrid contribution -1.396 -0.293 -0.006 1.426 sum 14.946 -20.039 -0.013 24.999 Atomic orbital electron populations 1.70124 1.08017 1.27798 1.51710 1.26048 0.95742 1.03646 0.94772 0.85390 0.78707 0.78150 0.78451 1.19823 1.21174 1.18237 1.21679 0.93833 0.91871 1.50443 0.91300 1.18950 0.94448 0.92955 0.95145 1.21619 0.98516 0.91360 1.02476 1.21345 0.91833 0.85160 1.01113 1.45784 1.11061 1.04616 1.74409 1.17205 0.87187 0.82702 0.76071 1.90848 1.17698 1.85187 1.52307 1.24638 1.02223 0.96009 1.25299 1.82938 0.91172 1.02622 1.64718 1.25714 1.04028 0.99291 1.02856 1.20005 0.89501 1.03231 1.09344 1.17583 0.80544 0.90752 1.00543 1.91510 1.36764 1.89263 1.93176 0.92837 0.98936 0.98913 0.91007 0.90996 0.92833 0.92848 0.75119 0.75771 0.80106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 13.29 21.45 0.28 -57.08 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 11 C 0.13 4.73 5.67 86.38 0.49 5.22 16 12 N -0.71 -21.20 5.55 -467.44 -2.59 -23.79 16 13 C 0.58 19.48 7.77 86.34 0.67 20.15 16 14 O -0.58 -25.11 16.14 -4.48 -0.07 -25.19 16 15 C -0.36 -8.99 6.45 24.06 0.16 -8.83 16 16 S 0.32 3.98 22.14 -56.49 -1.25 2.73 16 17 C -0.18 -1.50 10.91 66.80 0.73 -0.77 16 18 C -0.19 -2.66 10.15 21.12 0.21 -2.45 16 19 C 0.14 3.46 7.48 21.84 0.16 3.62 16 20 F -0.13 -4.00 16.42 44.97 0.74 -3.27 16 21 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 22 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.41 9.31 7.58 -92.71 -0.70 8.60 16 29 H 0.23 -0.14 8.06 -2.91 -0.02 -0.16 16 30 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -76.15 286.24 3.02 -73.13 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 0.46 Total: 2.91 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 3.43 Total: -15.03 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -2.31 Total: -80.87 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.07 Total: -25.19 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.74 Total: -3.27 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.25 Total: 2.73 kcal Total: -76.15 3.02 -73.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336701405.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.819 kcal (2) G-P(sol) polarization free energy of solvation -76.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds