Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 S 1.81396 * 109.47364 * 120.00165 * 2 1 3 5 5 C 1.81404 * 103.00121 * 64.99912 * 4 2 1 6 6 C 1.50698 * 109.46945 * 180.02562 * 5 4 2 7 7 N 1.29025 * 124.91718 * 90.00402 * 6 5 4 8 8 C 1.31783 * 117.12571 * 179.97438 * 7 6 5 9 9 C 1.50698 * 122.74801 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47462 * 305.02768 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 C 1.33637 * 114.50092 * 0.23063 * 8 7 6 19 19 S 1.70977 * 124.91615 * 269.99697 * 6 5 4 20 20 H 1.08997 * 109.47199 * 299.99636 * 1 2 3 21 21 H 1.08997 * 109.47091 * 59.99942 * 1 2 3 22 22 H 1.09007 * 109.46389 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47199 * 240.00364 * 2 1 3 24 24 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47243 * 299.99964 * 3 2 1 26 26 H 1.09007 * 109.46829 * 60.00099 * 3 2 1 27 27 H 1.08998 * 109.46742 * 60.00172 * 5 4 2 28 28 H 1.08997 * 109.47210 * 300.00380 * 5 4 2 29 29 H 1.09000 * 109.47438 * 185.02458 * 9 8 7 30 30 H 1.09001 * 109.47203 * 65.02511 * 9 8 7 31 31 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 32 32 H 1.07994 * 126.03940 * 179.76313 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8551 1.4810 5 6 1.5665 -2.5593 1.2289 6 6 1.9975 -3.4103 2.3956 7 7 1.3045 -3.5999 3.4673 8 6 1.8304 -4.3760 4.3934 9 6 1.1320 -4.6825 5.6931 10 6 0.7740 -3.3936 6.3872 11 1 1.0274 -2.4472 5.9328 12 6 0.1240 -3.4227 7.6028 13 7 -0.1835 -2.2980 8.2111 14 14 -0.3136 -5.0597 8.3891 15 1 -1.6670 -5.4771 7.9428 16 1 0.6801 -6.0855 7.9824 17 1 -0.3017 -4.9177 9.8672 18 6 3.0361 -4.8646 4.0879 19 16 3.4756 -4.2645 2.4906 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 2.0002 -2.9547 0.3105 28 1 0.4793 -2.5722 1.1522 29 1 1.7935 -5.2676 6.3320 30 1 0.2241 -5.2513 5.4924 31 1 -0.6372 -2.3184 9.0682 32 1 3.6348 -5.5137 4.7096 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379482972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = 28.663764 kcal Electronic energy + Delta-G solvation = -14255.739735 eV Core-core repulsion = 11855.033224 eV Total energy + Delta-G solvation = -2400.706511 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29720 -34.86862 -33.42906 -32.03204 -29.39434 -27.67241 -27.19385 -23.67015 -22.19662 -21.34689 -19.22888 -17.15705 -16.66505 -16.32450 -15.40898 -15.01581 -14.55878 -14.21254 -13.86597 -13.52426 -13.42756 -12.99050 -12.44098 -12.32649 -12.15605 -11.93986 -11.66421 -11.44318 -11.40593 -11.22623 -10.59834 -10.20549 -9.92735 -9.79633 -9.33599 -9.05315 -8.88977 -8.53678 -8.03849 -7.59913 -6.00125 -3.98220 0.89162 1.74878 1.90202 2.18828 2.55322 3.31697 3.38948 3.39758 3.58501 4.30893 4.45465 4.63077 4.71680 4.94714 5.08352 5.29549 5.36433 5.42503 5.52983 5.59834 5.64476 5.69700 5.79735 5.97846 6.05739 6.09674 6.71019 6.99902 7.10947 7.69283 8.39791 8.59293 9.08697 9.58468 11.13242 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.005528 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.719683 B = 5063.789884 C = 5941.840507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.068 4.068 3 C -0.132 4.132 4 S -0.222 6.222 5 C -0.007 4.007 6 C 0.047 3.953 7 N -0.426 5.426 8 C 0.121 3.879 9 C 0.050 3.950 10 C -0.504 4.504 11 H 0.077 0.923 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.876 3.124 15 H -0.276 1.276 16 H -0.266 1.266 17 H -0.286 1.286 18 C -0.266 4.266 19 S 0.078 5.922 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 0.186 -17.950 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.197 4.197 3 C -0.191 4.191 4 S 0.005 5.995 5 C -0.158 4.158 6 C -0.232 4.232 7 N -0.141 5.141 8 C -0.010 4.010 9 C 0.010 3.990 10 C -0.543 4.543 11 H 0.096 0.904 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.190 1.190 17 H -0.212 1.212 18 C -0.405 4.405 19 S 0.330 5.670 20 H 0.091 0.909 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.161 0.813 -17.574 18.640 hybrid contribution -1.361 -1.471 0.371 2.038 sum 4.800 -0.658 -17.202 17.871 Atomic orbital electron populations 1.22116 0.93161 1.02608 1.03005 1.23138 0.99055 0.99659 0.97851 1.21588 1.01726 0.92951 1.02795 1.87481 1.74410 1.05827 1.31820 1.21717 1.05158 0.93268 0.95645 1.25901 0.95373 1.03580 0.98352 1.66057 1.34119 1.14325 0.99623 1.20768 0.91818 0.91991 0.96439 1.18467 0.95028 0.98779 0.86737 1.20873 1.37562 0.92016 1.03833 0.90449 1.24961 0.95312 0.96194 0.96792 1.69901 1.41458 1.26030 1.16428 0.86848 0.79398 0.84818 0.78656 1.20161 1.19034 1.21213 1.26843 1.02051 1.12029 0.99586 1.83480 1.22530 1.44732 1.16245 0.90929 0.91940 0.92419 0.89701 0.91706 0.91246 0.91430 0.88544 0.87321 0.94603 0.94802 0.92680 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.10 37.16 0.34 -1.14 16 2 C -0.07 -0.70 3.38 -26.73 -0.09 -0.79 16 3 C -0.13 -1.20 9.20 37.16 0.34 -0.86 16 4 S -0.22 -3.26 21.13 -107.50 -2.27 -5.53 16 5 C -0.01 -0.09 6.22 36.00 0.22 0.13 16 6 C 0.05 0.84 6.65 -13.46 -0.09 0.75 16 7 N -0.43 -9.45 10.38 -8.06 -0.08 -9.54 16 8 C 0.12 2.70 6.02 -84.23 -0.51 2.19 16 9 C 0.05 1.23 4.53 -29.03 -0.13 1.10 16 10 C -0.50 -14.91 9.54 -34.44 -0.33 -15.24 16 11 H 0.08 2.56 7.98 -52.49 -0.42 2.14 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 14 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 C -0.27 -4.92 11.07 29.12 0.32 -4.60 16 19 S 0.08 1.22 23.18 -107.50 -2.49 -1.28 16 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.11 1.50 7.14 -51.93 -0.37 1.13 16 29 H 0.04 0.84 7.08 -51.93 -0.37 0.47 16 30 H 0.03 0.83 7.57 -51.93 -0.39 0.44 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -32.94 298.11 -8.73 -41.67 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.46 Total: -2.74 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.02 Total: -16.51 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.69 Total: -37.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -4.76 Total: -6.81 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.94 -8.73 -41.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379482972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.334 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds