Wall clock time and date at job start Mon Mar 30 2020 06:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 S 1.81396 * 109.47364 * 120.00165 * 2 1 3 5 5 C 1.81404 * 103.00121 * 64.99912 * 4 2 1 6 6 C 1.50698 * 109.46945 * 180.02562 * 5 4 2 7 7 N 1.29025 * 124.91718 * 90.00402 * 6 5 4 8 8 C 1.31783 * 117.12571 * 179.97438 * 7 6 5 9 9 C 1.50698 * 122.74801 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47462 * 305.02768 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 C 1.33637 * 114.50092 * 0.23063 * 8 7 6 19 19 S 1.70977 * 124.91615 * 269.99697 * 6 5 4 20 20 H 1.08997 * 109.47199 * 299.99636 * 1 2 3 21 21 H 1.08997 * 109.47091 * 59.99942 * 1 2 3 22 22 H 1.09007 * 109.46389 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47199 * 240.00364 * 2 1 3 24 24 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47243 * 299.99964 * 3 2 1 26 26 H 1.09007 * 109.46829 * 60.00099 * 3 2 1 27 27 H 1.08998 * 109.46742 * 60.00172 * 5 4 2 28 28 H 1.08997 * 109.47210 * 300.00380 * 5 4 2 29 29 H 1.09000 * 109.47438 * 185.02458 * 9 8 7 30 30 H 1.09001 * 109.47203 * 65.02511 * 9 8 7 31 31 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 32 32 H 1.07994 * 126.03940 * 179.76313 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8551 1.4810 5 6 1.5665 -2.5593 1.2289 6 6 1.9975 -3.4103 2.3956 7 7 1.3045 -3.5999 3.4673 8 6 1.8304 -4.3760 4.3934 9 6 1.1320 -4.6825 5.6931 10 6 0.7740 -3.3936 6.3872 11 1 1.0274 -2.4472 5.9328 12 6 0.1240 -3.4227 7.6028 13 7 -0.1835 -2.2980 8.2111 14 14 -0.3136 -5.0597 8.3891 15 1 -1.6670 -5.4771 7.9428 16 1 0.6801 -6.0855 7.9824 17 1 -0.3017 -4.9177 9.8672 18 6 3.0361 -4.8646 4.0879 19 16 3.4756 -4.2645 2.4906 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 2.0002 -2.9547 0.3105 28 1 0.4793 -2.5722 1.1522 29 1 1.7935 -5.2676 6.3320 30 1 0.2241 -5.2513 5.4924 31 1 -0.6372 -2.3184 9.0682 32 1 3.6348 -5.5137 4.7096 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379482972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:18 Heat of formation + Delta-G solvation = 7.499118 kcal Electronic energy + Delta-G solvation = -14256.657503 eV Core-core repulsion = 11855.033224 eV Total energy + Delta-G solvation = -2401.624279 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79565 -35.67003 -35.37374 -33.76446 -31.11942 -29.14911 -28.06328 -25.46259 -23.55386 -22.52345 -20.69635 -19.04902 -18.42157 -17.44315 -16.54134 -16.44491 -16.14158 -15.46758 -15.19137 -14.92085 -14.65343 -14.34110 -14.05711 -13.77987 -13.49184 -13.19323 -13.13179 -12.63323 -12.39867 -12.23467 -12.15789 -11.91746 -11.80639 -11.60556 -10.81733 -10.78993 -10.48192 -10.27604 -9.49485 -8.74819 -8.27454 -6.32573 -0.41728 0.44809 0.71567 0.78774 1.36898 1.39710 1.50956 1.53745 2.06692 2.36609 3.01701 3.09335 3.85034 3.85648 3.93542 4.13922 4.33095 4.36266 4.40478 4.55905 4.71421 4.77229 4.85153 4.88390 4.93180 5.17527 5.24861 5.26037 5.29685 5.55604 6.27114 6.71512 6.99717 7.28649 8.90205 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.005528 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.719683 B = 5063.789884 C = 5941.840507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.132 4.132 4 S -0.299 6.299 5 C 0.003 3.997 6 C 0.032 3.968 7 N -0.482 5.482 8 C 0.077 3.923 9 C 0.055 3.945 10 C -0.514 4.514 11 H 0.019 0.981 12 C 0.003 3.997 13 N -0.953 5.953 14 Si 0.957 3.043 15 H -0.268 1.268 16 H -0.237 1.237 17 H -0.281 1.281 18 C -0.267 4.267 19 S 0.173 5.827 20 H 0.050 0.950 21 H 0.090 0.910 22 H 0.054 0.946 23 H 0.111 0.889 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.267 0.733 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -1.705 -20.015 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C -0.190 4.190 4 S -0.074 6.074 5 C -0.147 4.147 6 C -0.246 4.246 7 N -0.198 5.198 8 C -0.054 4.054 9 C 0.015 3.985 10 C -0.552 4.552 11 H 0.038 0.962 12 C -0.193 4.193 13 N -0.594 5.594 14 Si 0.779 3.221 15 H -0.194 1.194 16 H -0.160 1.160 17 H -0.207 1.207 18 C -0.406 4.406 19 S 0.426 5.574 20 H 0.069 0.931 21 H 0.109 0.891 22 H 0.073 0.927 23 H 0.129 0.871 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.153 0.847 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 7.223 -1.083 -19.674 20.985 hybrid contribution -1.602 -0.727 0.847 1.953 sum 5.621 -1.809 -18.826 19.731 Atomic orbital electron populations 1.22110 0.92890 1.02581 1.03284 1.23248 0.99053 0.99643 0.95587 1.21629 1.01818 0.92209 1.03339 1.87726 1.75234 1.07940 1.36464 1.21814 1.05310 0.91995 0.95627 1.26485 0.96439 1.03610 0.98076 1.65982 1.36685 1.15991 1.01186 1.20504 0.93690 0.94776 0.96422 1.18275 0.95712 0.96194 0.88327 1.21049 1.37681 0.92149 1.04326 0.96249 1.26046 0.94916 1.01029 0.97312 1.70086 1.42837 1.29244 1.17210 0.85579 0.79884 0.79366 0.77315 1.19351 1.15972 1.20672 1.27194 1.00789 1.10994 1.01651 1.83059 1.19521 1.41865 1.12942 0.93089 0.89093 0.92665 0.87112 0.91652 0.88301 0.93106 0.84735 0.87561 0.92912 0.94844 0.92421 0.78363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.10 71.98 0.66 -2.09 16 2 C -0.05 -0.88 3.38 30.60 0.10 -0.78 16 3 C -0.13 -2.17 9.20 71.98 0.66 -1.51 16 4 S -0.30 -8.79 21.13 -56.49 -1.19 -9.99 16 5 C 0.00 0.09 6.22 71.24 0.44 0.53 16 6 C 0.03 1.12 6.65 88.52 0.59 1.71 16 7 N -0.48 -21.90 10.38 -179.41 -1.86 -23.77 16 8 C 0.08 3.47 6.02 41.52 0.25 3.72 16 9 C 0.05 2.73 4.53 29.10 0.13 2.86 16 10 C -0.51 -31.73 9.54 25.60 0.24 -31.49 16 11 H 0.02 1.37 7.98 -2.91 -0.02 1.35 16 12 C 0.00 0.20 5.47 84.65 0.46 0.66 16 13 N -0.95 -62.45 13.96 21.45 0.30 -62.15 16 14 Si 0.96 44.87 27.47 68.60 1.88 46.75 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 C -0.27 -9.42 11.07 66.78 0.74 -8.68 16 19 S 0.17 4.96 23.18 -56.49 -1.31 3.65 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.05 1.03 6.92 -2.38 -0.02 1.02 16 23 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.11 2.91 7.14 -2.39 -0.02 2.89 16 29 H 0.05 2.41 7.08 -2.39 -0.02 2.39 16 30 H 0.03 1.64 7.57 -2.39 -0.02 1.62 16 31 H 0.27 16.17 8.31 -92.71 -0.77 15.39 16 32 H 0.20 5.71 8.06 -2.91 -0.02 5.68 16 Total: -1.00 -76.79 298.11 3.14 -73.65 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.04 Total: 6.90 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 4.28 Total: -35.05 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.56 Total: -85.92 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -2.50 Total: -6.34 kcal Total: -76.79 3.14 -73.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379482972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.150 kcal (2) G-P(sol) polarization free energy of solvation -76.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds