Wall clock time and date at job start Mon Mar 30 2020 06:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.15687 * 2 1 4 4 C 1.50728 * 110.17817 * 238.24064 * 2 1 3 5 5 C 1.37892 * 132.46823 * 60.85348 * 4 2 1 6 6 C 1.38415 * 119.91386 * 179.97438 * 5 4 2 7 7 C 1.38387 * 120.20662 * 359.74694 * 6 5 4 8 8 C 1.37959 * 120.24768 * 0.51043 * 7 6 5 9 9 C 1.39011 * 107.27594 * 240.83092 * 4 2 1 10 10 C 1.49461 * 109.72823 * 0.02562 * 9 4 2 11 11 N 1.33039 * 137.55884 * 180.02562 * 10 9 4 12 12 C 1.30933 * 116.58970 * 179.97438 * 11 10 9 13 13 C 1.39874 * 125.27765 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99900 * 174.12828 * 13 12 11 15 15 C 1.40175 * 120.00157 * 354.12422 * 13 12 11 16 16 N 1.30735 * 119.99838 * 6.07541 * 15 13 12 17 17 Si 1.86798 * 120.00289 * 186.07788 * 15 13 12 18 18 H 1.48500 * 109.47312 * 94.98148 * 17 15 13 19 19 H 1.48503 * 109.47133 * 214.98068 * 17 15 13 20 20 H 1.48502 * 109.47054 * 334.98113 * 17 15 13 21 21 S 1.75796 * 109.44654 * 359.97438 * 12 11 10 22 22 C 1.37546 * 108.93370 * 359.97438 * 10 9 4 23 23 H 1.09009 * 109.46908 * 181.76541 * 1 2 3 24 24 H 1.09005 * 109.47213 * 301.75689 * 1 2 3 25 25 H 1.08995 * 109.47532 * 61.76370 * 1 2 3 26 26 H 1.07991 * 120.04283 * 359.95615 * 5 4 2 27 27 H 1.08001 * 119.89297 * 180.02562 * 6 5 4 28 28 H 1.07999 * 119.87573 * 180.25678 * 7 6 5 29 29 H 1.07993 * 120.12586 * 179.77061 * 8 7 6 30 30 H 0.96995 * 119.99785 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9056 1.0233 0.0000 4 6 2.0499 -0.7447 -1.2029 5 6 1.9060 -0.5392 -2.5589 6 6 2.5100 -1.4032 -3.4558 7 6 3.2624 -2.4699 -2.9962 8 6 3.4070 -2.6856 -1.6412 9 6 2.7995 -1.8167 -0.7326 10 6 2.7988 -1.8156 0.7620 11 7 3.3132 -2.5504 1.7446 12 6 3.0444 -2.1654 2.9668 13 6 3.4900 -2.8009 4.1304 14 1 3.2967 -2.3572 5.0959 15 6 4.1873 -4.0138 4.0435 16 7 4.5252 -4.4911 2.8742 17 14 4.6338 -4.9481 5.5982 18 1 3.5953 -5.9728 5.8754 19 1 5.9490 -5.6130 5.4157 20 1 4.7119 -4.0012 6.7395 21 16 2.0377 -0.7250 2.9186 22 6 2.0535 -0.7488 1.2072 23 1 -0.3633 -1.0273 0.0317 24 1 -0.3634 0.5409 0.8738 25 1 -0.3634 0.4862 -0.9053 26 1 1.3226 0.2945 -2.9205 27 1 2.3975 -1.2418 -4.5177 28 1 3.7348 -3.1383 -3.7008 29 1 3.9915 -3.5208 -1.2847 30 1 5.0074 -5.3306 2.8141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381091932.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:26 Heat of formation + Delta-G solvation = 43.591673 kcal Electronic energy + Delta-G solvation = -15925.642522 eV Core-core repulsion = 13390.139383 eV Total energy + Delta-G solvation = -2535.503139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35620 -38.73151 -36.39931 -35.03245 -32.24869 -30.54240 -30.16706 -27.89914 -25.12438 -23.76819 -23.25743 -21.49595 -20.68136 -18.40783 -18.34075 -16.87899 -16.58254 -16.22764 -15.67187 -15.34258 -15.02809 -14.48188 -14.37137 -14.30820 -13.74839 -13.29551 -13.10820 -12.99591 -12.92206 -12.70406 -12.31346 -12.18600 -12.00737 -11.65453 -11.40169 -11.31518 -10.23185 -9.81543 -9.61406 -9.55479 -8.85327 -8.57906 -6.63933 -0.00013 0.48707 0.82443 1.11524 1.40435 1.51046 1.57049 1.66386 2.17536 2.38689 2.94557 3.34812 3.55044 3.61525 3.93027 4.20441 4.26041 4.41335 4.43509 4.55113 4.68672 4.83445 4.91755 4.98525 5.00785 5.10996 5.28885 5.40163 5.47585 5.55352 5.65253 5.80365 6.04262 6.12278 6.28982 6.57738 7.90999 8.24144 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.006826 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.055614 B = 4101.214614 C = 5025.575641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.053 3.947 3 H 0.090 0.910 4 C -0.092 4.092 5 C -0.097 4.097 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.051 4.051 10 C 0.091 3.909 11 N -0.562 5.562 12 C 0.203 3.797 13 C -0.417 4.417 14 H 0.111 0.889 15 C 0.025 3.975 16 N -0.753 5.753 17 Si 1.007 2.993 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.245 1.245 21 S -0.023 6.023 22 C -0.401 4.401 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.160 0.840 27 H 0.169 0.831 28 H 0.152 0.848 29 H 0.100 0.900 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 4.004 -7.493 9.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.032 3.968 3 H 0.108 0.892 4 C -0.094 4.094 5 C -0.114 4.114 6 C -0.129 4.129 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.054 4.054 10 C -0.045 4.045 11 N -0.281 5.281 12 C -0.052 4.052 13 C -0.461 4.461 14 H 0.129 0.871 15 C -0.200 4.200 16 N -0.375 5.375 17 Si 0.825 3.175 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.167 1.167 21 S 0.237 5.763 22 C -0.525 4.525 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.177 0.823 27 H 0.187 0.813 28 H 0.170 0.830 29 H 0.118 0.882 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.713 4.104 -6.899 8.845 hybrid contribution 0.649 -0.926 0.079 1.134 sum -3.064 3.178 -6.821 8.124 Atomic orbital electron populations 1.21575 0.91783 1.01148 1.02839 1.18344 0.96393 0.96595 0.85424 0.89195 1.20478 0.98073 0.95621 0.95236 1.20752 1.00495 1.00960 0.89234 1.21566 0.96384 0.93801 1.01138 1.21316 0.99695 0.99295 0.93386 1.21092 0.99944 0.98729 0.94126 1.19276 0.99831 0.97700 0.88555 1.21154 0.96534 0.92620 0.94158 1.66991 1.31538 1.32086 0.97501 1.24424 0.94593 0.91690 0.94456 1.19478 1.29440 1.04946 0.92208 0.87147 1.27233 0.93512 0.97570 1.01728 1.70145 1.22666 1.16864 1.27875 0.84830 0.78526 0.78148 0.76038 1.18422 1.18940 1.16738 1.82340 1.57437 1.36218 1.00296 1.25677 1.19567 1.09747 0.97507 0.94657 0.92370 0.89168 0.82252 0.81343 0.83037 0.88194 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.68 9.25 71.98 0.67 -3.01 16 2 C 0.05 2.05 3.49 -12.06 -0.04 2.01 16 3 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 4 C -0.09 -3.44 5.61 -19.75 -0.11 -3.55 16 5 C -0.10 -2.63 10.05 22.23 0.22 -2.41 16 6 C -0.11 -2.68 10.05 22.35 0.22 -2.46 16 7 C -0.12 -3.49 10.03 22.24 0.22 -3.27 16 8 C -0.12 -4.88 10.11 22.54 0.23 -4.65 16 9 C -0.05 -2.37 6.20 -19.73 -0.12 -2.50 16 10 C 0.09 5.04 7.73 41.83 0.32 5.36 16 11 N -0.56 -34.27 8.76 -181.97 -1.59 -35.86 16 12 C 0.20 11.70 7.03 85.22 0.60 12.30 16 13 C -0.42 -22.44 9.38 23.14 0.22 -22.23 16 14 H 0.11 5.35 7.86 -2.91 -0.02 5.33 16 15 C 0.03 1.26 5.49 85.33 0.47 1.73 16 16 N -0.75 -41.27 11.88 21.87 0.26 -41.01 16 17 Si 1.01 36.57 29.57 68.60 2.03 38.60 16 18 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 20 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 21 S -0.02 -1.15 23.14 -56.49 -1.31 -2.46 16 22 C -0.40 -19.90 6.72 25.74 0.17 -19.72 16 23 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.16 3.03 8.06 -2.92 -0.02 3.01 16 27 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 28 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.29 14.12 8.29 -92.71 -0.77 13.35 16 Total: -1.00 -71.06 276.75 3.62 -67.44 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.16 Total: 15.68 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 3.07 Total: -42.40 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -1.33 Total: -76.87 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -1.31 Total: -2.46 kcal Total: -71.06 3.62 -67.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381091932.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.035 kcal (2) G-P(sol) polarization free energy of solvation -71.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds