Wall clock time and date at job start Mon Mar 30 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46855 * 2 1 4 4 C 1.33334 * 122.70422 * 124.99888 * 3 2 1 5 5 S 1.76168 * 108.10026 * 179.74567 * 4 3 2 6 6 C 1.70962 * 90.36142 * 0.30097 * 5 4 3 7 7 S 1.76194 * 124.95446 * 179.97438 * 6 5 4 8 8 C 1.81000 * 99.99866 * 354.16402 * 7 6 5 9 9 H 1.09000 * 109.47289 * 50.29653 * 8 7 6 10 10 C 1.50706 * 109.47076 * 170.29495 * 8 7 6 11 11 H 1.08003 * 119.99907 * 0.02562 * 10 8 7 12 12 C 1.37875 * 119.99849 * 179.97438 * 10 8 7 13 13 N 1.31520 * 119.99708 * 179.97438 * 12 10 8 14 14 Si 1.86797 * 120.00175 * 0.02562 * 12 10 8 15 15 H 1.48492 * 109.46989 * 269.99664 * 14 12 10 16 16 H 1.48503 * 109.46921 * 29.99899 * 14 12 10 17 17 H 1.48499 * 109.46929 * 149.99720 * 14 12 10 18 18 C 1.52997 * 109.47228 * 290.29337 * 8 7 6 19 19 C 1.53002 * 109.47145 * 297.14468 * 18 8 7 20 20 N 1.29769 * 110.09290 * 359.69497 * 6 5 4 21 21 H 1.08994 * 109.47255 * 60.00470 * 1 2 3 22 22 H 1.09002 * 109.46722 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47096 * 299.99764 * 1 2 3 24 24 H 1.08995 * 109.47569 * 239.99728 * 2 1 3 25 25 H 1.09002 * 109.47163 * 119.99798 * 2 1 3 26 26 H 1.07994 * 125.94751 * 359.97438 * 4 3 2 27 27 H 0.96994 * 119.99879 * 179.97438 * 13 12 10 28 28 H 1.09001 * 109.46989 * 57.13501 * 18 8 7 29 29 H 1.08995 * 109.47243 * 177.14125 * 18 8 7 30 30 H 1.09002 * 109.46934 * 183.72987 * 19 18 8 31 31 H 1.09003 * 109.47046 * 303.72564 * 19 18 8 32 32 H 1.08995 * 109.47400 * 63.72190 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8791 1.8856 0.9191 5 16 3.2128 3.5758 0.5510 6 6 2.1715 3.4978 -0.8027 7 16 1.8353 4.8379 -1.8961 8 6 2.7171 6.1685 -1.0430 9 1 3.7319 5.8432 -0.8136 10 6 2.7683 7.3862 -1.9294 11 1 2.3142 7.3606 -2.9090 12 6 3.3940 8.5333 -1.4894 13 7 3.4391 9.5959 -2.2632 14 14 4.1788 8.5779 0.2051 15 1 3.1790 9.0385 1.2017 16 1 4.6495 7.2172 0.5686 17 1 5.3320 9.5135 0.1920 18 6 1.9863 6.5137 0.2561 19 6 0.5864 7.0379 -0.0701 20 7 1.6694 2.3061 -0.9108 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.2917 1.3228 1.7432 27 1 3.8789 10.4030 -1.9535 28 1 1.9045 5.6204 0.8753 29 1 2.5446 7.2794 0.7946 30 1 0.0902 7.3459 0.8502 31 1 0.6658 7.8916 -0.7433 32 1 0.0059 6.2499 -0.5498 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383032692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:38 Heat of formation + Delta-G solvation = 29.078072 kcal Electronic energy + Delta-G solvation = -14875.184441 eV Core-core repulsion = 12474.495896 eV Total energy + Delta-G solvation = -2400.688545 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43939 -35.33890 -33.40004 -31.99108 -29.43298 -27.70941 -25.34010 -23.99782 -23.04376 -20.93573 -19.35082 -18.12237 -16.65802 -16.21161 -15.29587 -14.89259 -14.43617 -14.04555 -13.76444 -13.58099 -13.40355 -13.10370 -12.58712 -12.35227 -11.81096 -11.44100 -11.25576 -11.03558 -10.97586 -10.72277 -10.58601 -10.47726 -10.05465 -9.63334 -9.43572 -9.42238 -8.99204 -8.82807 -8.68005 -6.93598 -6.33522 -4.38153 0.92669 1.50040 1.79487 2.11043 2.98786 3.11067 3.19196 3.23346 3.26591 4.17192 4.61473 4.95793 5.02460 5.26758 5.31772 5.50516 5.72013 5.72927 5.83586 5.86592 5.95880 6.07890 6.22392 6.37681 6.38979 6.61080 6.65100 6.80295 7.16605 7.27736 7.93013 8.11174 8.64356 9.21364 10.77420 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.037377 B = 0.006539 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.950480 B = 4281.123728 C = 4558.776105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.083 3.917 4 C -0.292 4.292 5 S 0.123 5.877 6 C 0.039 3.961 7 S 0.017 5.983 8 C 0.029 3.971 9 H 0.055 0.945 10 C -0.509 4.509 11 H 0.089 0.911 12 C 0.091 3.909 13 N -0.882 5.882 14 Si 0.876 3.124 15 H -0.271 1.271 16 H -0.263 1.263 17 H -0.290 1.290 18 C -0.130 4.130 19 C -0.142 4.142 20 N -0.471 5.471 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.170 0.830 27 H 0.271 0.729 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -13.349 7.513 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.052 4.052 4 C -0.436 4.436 5 S 0.375 5.625 6 C -0.347 4.347 7 S 0.253 5.747 8 C -0.101 4.101 9 H 0.073 0.927 10 C -0.548 4.548 11 H 0.107 0.893 12 C -0.115 4.115 13 N -0.518 5.518 14 Si 0.705 3.295 15 H -0.197 1.197 16 H -0.188 1.188 17 H -0.217 1.217 18 C -0.170 4.170 19 C -0.200 4.200 20 N -0.191 5.191 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.187 0.813 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.308 -12.370 6.396 14.116 hybrid contribution 1.002 -0.746 2.188 2.520 sum -1.307 -13.116 8.585 15.730 Atomic orbital electron populations 1.21667 0.94403 1.01263 1.02810 1.20094 0.96627 0.89214 1.02560 1.20289 0.96546 0.97159 0.91194 1.26635 1.09921 0.98934 1.08072 1.84347 1.44921 1.08386 1.24851 1.29148 1.00867 1.01706 1.02953 1.85748 1.65686 0.95456 1.27801 1.21825 0.96274 0.95886 0.96154 0.92722 1.20173 1.38851 0.93146 1.02616 0.89316 1.24763 0.94817 0.94817 0.97134 1.69826 1.42440 1.02809 1.36707 0.86979 0.79139 0.78543 0.84807 1.19746 1.18842 1.21680 1.22154 0.98346 0.99498 0.96966 1.21746 0.94961 1.02716 1.00548 1.66520 1.26278 0.99467 1.26834 0.91574 0.92589 0.92947 0.90414 0.90668 0.81298 0.91907 0.93731 0.92251 0.94566 0.90239 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.81 37.16 0.36 -1.23 16 2 C -0.04 -0.52 6.43 -27.88 -0.18 -0.70 16 3 C 0.08 1.28 6.07 -84.19 -0.51 0.77 16 4 C -0.29 -4.24 11.04 29.02 0.32 -3.92 16 5 S 0.12 2.11 19.26 -107.50 -2.07 0.04 16 6 C 0.04 0.74 7.29 51.89 0.38 1.12 16 7 S 0.02 0.35 20.39 -107.50 -2.19 -1.84 16 8 C 0.03 0.64 1.38 -27.88 -0.04 0.60 16 9 H 0.06 1.25 6.39 -51.92 -0.33 0.92 16 10 C -0.51 -13.21 7.70 -34.44 -0.27 -13.47 16 11 H 0.09 2.52 7.95 -52.48 -0.42 2.10 16 12 C 0.09 2.42 5.45 -17.82 -0.10 2.32 16 13 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 14 Si 0.88 20.26 24.35 -169.99 -4.14 16.12 16 15 H -0.27 -6.08 6.89 56.52 0.39 -5.69 16 16 H -0.26 -5.82 6.53 56.52 0.37 -5.45 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 C -0.13 -2.70 4.89 -26.73 -0.13 -2.83 16 19 C -0.14 -2.81 9.43 37.16 0.35 -2.46 16 20 N -0.47 -8.71 10.41 -10.94 -0.11 -8.83 16 21 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 26 H 0.17 1.89 8.06 -52.49 -0.42 1.46 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.04 0.85 5.72 -51.93 -0.30 0.55 16 29 H 0.06 1.28 3.34 -51.93 -0.17 1.10 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.74 6.99 -51.93 -0.36 1.38 16 32 H 0.06 1.07 7.18 -51.93 -0.37 0.70 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -27.75 281.00 -7.40 -35.15 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.09 Total: -0.81 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 0.19 Total: -19.80 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.66 Total: -33.09 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.14 Total: 16.12 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -4.26 Total: -1.81 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.75 -7.40 -35.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383032692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.232 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds