Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46855 * 2 1 4 4 C 1.33334 * 122.70422 * 124.99888 * 3 2 1 5 5 S 1.76168 * 108.10026 * 179.74567 * 4 3 2 6 6 C 1.70962 * 90.36142 * 0.30097 * 5 4 3 7 7 S 1.76194 * 124.95446 * 179.97438 * 6 5 4 8 8 C 1.81000 * 99.99866 * 354.16402 * 7 6 5 9 9 H 1.09000 * 109.47289 * 50.29653 * 8 7 6 10 10 C 1.50706 * 109.47076 * 170.29495 * 8 7 6 11 11 H 1.08003 * 119.99907 * 0.02562 * 10 8 7 12 12 C 1.37875 * 119.99849 * 179.97438 * 10 8 7 13 13 N 1.31520 * 119.99708 * 179.97438 * 12 10 8 14 14 Si 1.86797 * 120.00175 * 0.02562 * 12 10 8 15 15 H 1.48492 * 109.46989 * 269.99664 * 14 12 10 16 16 H 1.48503 * 109.46921 * 29.99899 * 14 12 10 17 17 H 1.48499 * 109.46929 * 149.99720 * 14 12 10 18 18 C 1.52997 * 109.47228 * 290.29337 * 8 7 6 19 19 C 1.53002 * 109.47145 * 297.14468 * 18 8 7 20 20 N 1.29769 * 110.09290 * 359.69497 * 6 5 4 21 21 H 1.08994 * 109.47255 * 60.00470 * 1 2 3 22 22 H 1.09002 * 109.46722 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47096 * 299.99764 * 1 2 3 24 24 H 1.08995 * 109.47569 * 239.99728 * 2 1 3 25 25 H 1.09002 * 109.47163 * 119.99798 * 2 1 3 26 26 H 1.07994 * 125.94751 * 359.97438 * 4 3 2 27 27 H 0.96994 * 119.99879 * 179.97438 * 13 12 10 28 28 H 1.09001 * 109.46989 * 57.13501 * 18 8 7 29 29 H 1.08995 * 109.47243 * 177.14125 * 18 8 7 30 30 H 1.09002 * 109.46934 * 183.72987 * 19 18 8 31 31 H 1.09003 * 109.47046 * 303.72564 * 19 18 8 32 32 H 1.08995 * 109.47400 * 63.72190 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8791 1.8856 0.9191 5 16 3.2128 3.5758 0.5510 6 6 2.1715 3.4978 -0.8027 7 16 1.8353 4.8379 -1.8961 8 6 2.7171 6.1685 -1.0430 9 1 3.7319 5.8432 -0.8136 10 6 2.7683 7.3862 -1.9294 11 1 2.3142 7.3606 -2.9090 12 6 3.3940 8.5333 -1.4894 13 7 3.4391 9.5959 -2.2632 14 14 4.1788 8.5779 0.2051 15 1 3.1790 9.0385 1.2017 16 1 4.6495 7.2172 0.5686 17 1 5.3320 9.5135 0.1920 18 6 1.9863 6.5137 0.2561 19 6 0.5864 7.0379 -0.0701 20 7 1.6694 2.3061 -0.9108 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.2917 1.3228 1.7432 27 1 3.8789 10.4030 -1.9535 28 1 1.9045 5.6204 0.8753 29 1 2.5446 7.2794 0.7946 30 1 0.0902 7.3459 0.8502 31 1 0.6658 7.8916 -0.7433 32 1 0.0059 6.2499 -0.5498 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383032692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = 12.382602 kcal Electronic energy + Delta-G solvation = -14875.908411 eV Core-core repulsion = 12474.495896 eV Total energy + Delta-G solvation = -2401.412515 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71460 -37.12503 -34.42835 -33.95223 -30.58699 -29.51308 -26.74749 -25.55969 -24.24060 -22.66459 -20.65531 -19.47614 -18.50168 -17.73896 -16.93935 -16.09719 -16.01312 -15.55564 -15.14954 -15.04049 -14.73240 -14.57745 -14.22013 -13.50227 -13.14444 -12.81179 -12.70317 -12.66223 -12.41544 -12.24573 -12.07098 -11.79193 -11.76448 -11.39313 -11.11796 -10.81032 -10.72378 -10.47893 -10.07328 -8.48375 -8.38424 -6.47470 -0.38566 0.14454 0.29909 0.81453 1.28523 1.33418 1.41935 1.62526 1.73610 2.24698 2.94633 3.47965 4.03135 4.09688 4.21310 4.26836 4.30255 4.41069 4.57486 4.69059 4.70101 4.94438 5.02571 5.04404 5.13814 5.16325 5.23041 5.34370 5.42842 5.58628 6.04490 6.53789 6.64058 7.15237 8.76193 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.037377 B = 0.006539 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.950480 B = 4281.123728 C = 4558.776105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.061 3.939 4 C -0.262 4.262 5 S 0.123 5.877 6 C 0.012 3.988 7 S -0.016 6.016 8 C 0.035 3.965 9 H 0.053 0.947 10 C -0.508 4.508 11 H 0.048 0.952 12 C 0.042 3.958 13 N -0.930 5.930 14 Si 0.928 3.072 15 H -0.256 1.256 16 H -0.244 1.244 17 H -0.291 1.291 18 C -0.128 4.128 19 C -0.138 4.138 20 N -0.482 5.482 21 H 0.039 0.961 22 H 0.082 0.918 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.212 0.788 27 H 0.273 0.727 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 -16.003 10.552 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 C -0.072 4.072 4 C -0.404 4.404 5 S 0.374 5.626 6 C -0.374 4.374 7 S 0.219 5.781 8 C -0.095 4.095 9 H 0.071 0.929 10 C -0.547 4.547 11 H 0.066 0.934 12 C -0.160 4.160 13 N -0.568 5.568 14 Si 0.753 3.247 15 H -0.181 1.181 16 H -0.168 1.168 17 H -0.218 1.218 18 C -0.167 4.167 19 C -0.196 4.196 20 N -0.202 5.202 21 H 0.058 0.942 22 H 0.101 0.899 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.128 0.872 26 H 0.229 0.771 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.916 -15.055 9.439 17.872 hybrid contribution 0.841 -0.123 1.223 1.490 sum -1.075 -15.178 10.663 18.580 Atomic orbital electron populations 1.21644 0.94351 1.02557 1.01346 1.20275 0.96621 0.86932 1.04466 1.20919 0.97120 0.98392 0.90814 1.27149 1.07947 0.97199 1.08122 1.84271 1.44057 1.10763 1.23507 1.28724 1.03064 1.01480 1.04096 1.85726 1.66468 0.96578 1.29332 1.21597 0.96732 0.94849 0.96333 0.92936 1.20246 1.37857 0.94903 1.01661 0.93382 1.25523 0.95330 0.94287 1.00851 1.69959 1.44180 1.03717 1.38954 0.86134 0.78492 0.79473 0.80575 1.18135 1.16773 1.21835 1.22122 0.98294 1.00278 0.96036 1.21683 0.95030 1.01625 1.01220 1.66496 1.26155 0.99661 1.27888 0.94155 0.89946 0.93274 0.89967 0.87243 0.77108 0.91787 0.91625 0.92574 0.91827 0.93158 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.81 71.98 0.71 -2.03 16 2 C -0.04 -0.83 6.43 29.85 0.19 -0.63 16 3 C 0.06 1.69 6.07 41.41 0.25 1.94 16 4 C -0.26 -6.42 11.04 66.71 0.74 -5.68 16 5 S 0.12 3.87 19.26 -56.49 -1.09 2.78 16 6 C 0.01 0.43 7.29 130.55 0.95 1.38 16 7 S -0.02 -0.69 20.39 -56.49 -1.15 -1.84 16 8 C 0.03 1.57 1.38 29.85 0.04 1.61 16 9 H 0.05 2.37 6.39 -2.40 -0.02 2.35 16 10 C -0.51 -27.32 7.70 25.60 0.20 -27.12 16 11 H 0.05 2.91 7.95 -2.91 -0.02 2.89 16 12 C 0.04 2.27 5.45 84.65 0.46 2.73 16 13 N -0.93 -54.73 13.96 21.45 0.30 -54.43 16 14 Si 0.93 41.20 24.35 68.60 1.67 42.87 16 15 H -0.26 -10.70 6.89 99.48 0.69 -10.02 16 16 H -0.24 -9.98 6.53 99.48 0.65 -9.33 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 18 C -0.13 -5.14 4.89 30.59 0.15 -4.99 16 19 C -0.14 -5.38 9.43 71.98 0.68 -4.70 16 20 N -0.48 -17.08 10.41 -188.53 -1.96 -19.04 16 21 H 0.04 0.98 8.07 -2.39 -0.02 0.96 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.11 1.37 8.03 -2.39 -0.02 1.35 16 26 H 0.21 3.34 8.06 -2.91 -0.02 3.31 16 27 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.07 2.35 5.72 -2.39 -0.01 2.34 16 29 H 0.06 2.29 3.34 -2.39 -0.01 2.28 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.24 6.99 -2.39 -0.02 2.22 16 32 H 0.06 2.26 7.18 -2.39 -0.02 2.24 16 Total: -1.00 -62.06 281.00 3.17 -58.89 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.04 Total: 8.25 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 4.37 Total: -37.48 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.66 Total: -73.47 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.67 Total: 42.87 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.24 Total: 0.93 kcal Total: -62.06 3.17 -58.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383032692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.270 kcal (2) G-P(sol) polarization free energy of solvation -62.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds